miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5884 3' -55 NC_001806.1 + 44239 0.65 0.961652
Target:  5'- uGGUCCCGUgaaagUUGUCcGGGG--GGAUCCa -3'
miRNA:   3'- -CCAGGGCA-----GGUAGuUCCUggCCUAGG- -5'
5884 3' -55 NC_001806.1 + 140885 0.65 0.961652
Target:  5'- aGGgCCCGUCgGUaCAGGGcggGCCGucAUCCg -3'
miRNA:   3'- -CCaGGGCAGgUA-GUUCC---UGGCc-UAGG- -5'
5884 3' -55 NC_001806.1 + 36321 0.66 0.959552
Target:  5'- -aUCCCGUUUAUCGuguacucucccgccgAGGacgcGCCGGAcCCa -3'
miRNA:   3'- ccAGGGCAGGUAGU---------------UCC----UGGCCUaGG- -5'
5884 3' -55 NC_001806.1 + 93187 0.66 0.958109
Target:  5'- cGUCCUGgCCuGUCcccGGGCCGGGUUUg -3'
miRNA:   3'- cCAGGGCaGG-UAGuu-CCUGGCCUAGG- -5'
5884 3' -55 NC_001806.1 + 143605 0.66 0.958109
Target:  5'- cGGUCCCccGUUCccCGGGGGCCGuuaucUCCa -3'
miRNA:   3'- -CCAGGG--CAGGuaGUUCCUGGCcu---AGG- -5'
5884 3' -55 NC_001806.1 + 18070 0.66 0.953176
Target:  5'- aGGUCCCagacgagcaacccaCAUCGccGGGCCGuGGUCCg -3'
miRNA:   3'- -CCAGGGcag-----------GUAGUu-CCUGGC-CUAGG- -5'
5884 3' -55 NC_001806.1 + 151263 0.66 0.950365
Target:  5'- cGGgCCCacgCCGggcggUggGGGCCGGggCCg -3'
miRNA:   3'- -CCaGGGca-GGUa----GuuCCUGGCCuaGG- -5'
5884 3' -55 NC_001806.1 + 74035 0.66 0.947867
Target:  5'- gGGcCCCGaggCCGUUcagguucggcuggagGAGGugCGGAcCCa -3'
miRNA:   3'- -CCaGGGCa--GGUAG---------------UUCCugGCCUaGG- -5'
5884 3' -55 NC_001806.1 + 89259 0.66 0.946156
Target:  5'- gGGUCCCcggcuggcUCCG-CGAGGGCCGGc--- -3'
miRNA:   3'- -CCAGGGc-------AGGUaGUUCCUGGCCuagg -5'
5884 3' -55 NC_001806.1 + 46799 0.66 0.946156
Target:  5'- -uUCCCaaUCCGaCGGGGACCGGGaCUg -3'
miRNA:   3'- ccAGGGc-AGGUaGUUCCUGGCCUaGG- -5'
5884 3' -55 NC_001806.1 + 116442 0.66 0.945723
Target:  5'- cGUCCCGcCCGuguUCGAGGGCCaagcgacGGAcgugcgCCu -3'
miRNA:   3'- cCAGGGCaGGU---AGUUCCUGG-------CCUa-----GG- -5'
5884 3' -55 NC_001806.1 + 30725 0.66 0.94172
Target:  5'- cGGcCCCGaccCCcgCGGGGGCCGccucuUCCg -3'
miRNA:   3'- -CCaGGGCa--GGuaGUUCCUGGCcu---AGG- -5'
5884 3' -55 NC_001806.1 + 5404 0.66 0.94172
Target:  5'- cGGUCCCG--CGUC-GGGuCgUGGAUCCg -3'
miRNA:   3'- -CCAGGGCagGUAGuUCCuG-GCCUAGG- -5'
5884 3' -55 NC_001806.1 + 45163 0.66 0.94172
Target:  5'- ---gCUGUCCGgcuggaCAAGGAucgccCCGGAUCCc -3'
miRNA:   3'- ccagGGCAGGUa-----GUUCCU-----GGCCUAGG- -5'
5884 3' -55 NC_001806.1 + 48975 0.67 0.937053
Target:  5'- -cUCCCGUCCAUucccaucgCGAGG---GGGUCCg -3'
miRNA:   3'- ccAGGGCAGGUA--------GUUCCuggCCUAGG- -5'
5884 3' -55 NC_001806.1 + 5099 0.67 0.932154
Target:  5'- cGG-CCCGUCgGU-GGGGcCCGGGgagCCg -3'
miRNA:   3'- -CCaGGGCAGgUAgUUCCuGGCCUa--GG- -5'
5884 3' -55 NC_001806.1 + 57848 0.67 0.932154
Target:  5'- --cCCCGUCUuagguuUCuuuAGGGCCGuGUCCg -3'
miRNA:   3'- ccaGGGCAGGu-----AGu--UCCUGGCcUAGG- -5'
5884 3' -55 NC_001806.1 + 36048 0.67 0.927022
Target:  5'- uGG-CCUGUCgCGUUgucucuGAGGGCUuuGGGUCCa -3'
miRNA:   3'- -CCaGGGCAG-GUAG------UUCCUGG--CCUAGG- -5'
5884 3' -55 NC_001806.1 + 141906 0.67 0.927022
Target:  5'- uGGUCCaGUCCA--GAGGcGCCGaGGUCg -3'
miRNA:   3'- -CCAGGgCAGGUagUUCC-UGGC-CUAGg -5'
5884 3' -55 NC_001806.1 + 3334 0.67 0.921657
Target:  5'- gGGUCCC-UCCGgccgCGGGGggcuggcggGCCGGGcCCc -3'
miRNA:   3'- -CCAGGGcAGGUa---GUUCC---------UGGCCUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.