miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5884 5' -60.5 NC_001806.1 + 147809 0.66 0.73015
Target:  5'- cUGGCauGGGCgCCGCGGGGggccuguGGGGAg -3'
miRNA:   3'- cACCGggUCUG-GGCGCUCCau-----CUCCU- -5'
5884 5' -60.5 NC_001806.1 + 72534 0.66 0.73015
Target:  5'- -cGGCgUGGGCCCcCGggaggGGGUAGGGGGc -3'
miRNA:   3'- caCCGgGUCUGGGcGC-----UCCAUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 62221 0.66 0.73015
Target:  5'- cUGGUCCguaaGGGCCgucagaGCGGGGgAGAGGGc -3'
miRNA:   3'- cACCGGG----UCUGGg-----CGCUCCaUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 56654 0.66 0.73015
Target:  5'- -cGGCCgGcGGCCCGUGGGaucguUGGGGGGu -3'
miRNA:   3'- caCCGGgU-CUGGGCGCUCc----AUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 21177 0.66 0.73015
Target:  5'- -cGaGCCCAGACCgCGaCGAGc-GGGGGGc -3'
miRNA:   3'- caC-CGGGUCUGG-GC-GCUCcaUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 1416 0.66 0.724393
Target:  5'- cGUGGCCgAGGCCCaGCGAaucccgggcggcgccGGcGGcAGGGc -3'
miRNA:   3'- -CACCGGgUCUGGG-CGCU---------------CCaUC-UCCU- -5'
5884 5' -60.5 NC_001806.1 + 87018 0.66 0.710859
Target:  5'- aUGGCgagCCAGuCCCGCagGAGGaugcuGAGGAg -3'
miRNA:   3'- cACCG---GGUCuGGGCG--CUCCau---CUCCU- -5'
5884 5' -60.5 NC_001806.1 + 67570 0.66 0.710859
Target:  5'- -aGGCCCuGuCCCGCGGuaucgcguguuGUGGGGGGg -3'
miRNA:   3'- caCCGGGuCuGGGCGCUc----------CAUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 34427 0.66 0.701115
Target:  5'- -cGGgCCGGGCCggguggGCGGGGUuuggaaaaacgaGGAGGAg -3'
miRNA:   3'- caCCgGGUCUGGg-----CGCUCCA------------UCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 77275 0.66 0.701115
Target:  5'- gGUGGCCgGgGACCUGgccccaUGGgcGGUGGAGGAg -3'
miRNA:   3'- -CACCGGgU-CUGGGC------GCU--CCAUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 22122 0.66 0.691315
Target:  5'- -gGGCCUcugggGGGCgCC-CGAGGcGGAGGAg -3'
miRNA:   3'- caCCGGG-----UCUG-GGcGCUCCaUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 115553 0.66 0.691315
Target:  5'- -aGcGCCCcccggGGugCCGCGAacucGUGGAGGAc -3'
miRNA:   3'- caC-CGGG-----UCugGGCGCUc---CAUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 110098 0.66 0.685412
Target:  5'- -cGGCCCAGAggcCCCcuacgguggauguggGCGuGGGUauGGGGGAa -3'
miRNA:   3'- caCCGGGUCU---GGG---------------CGC-UCCA--UCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 9789 0.66 0.681469
Target:  5'- -gGGCCCcGACgUGCG-GGUGGGuGGGc -3'
miRNA:   3'- caCCGGGuCUGgGCGCuCCAUCU-CCU- -5'
5884 5' -60.5 NC_001806.1 + 24577 0.66 0.681469
Target:  5'- -cGGCgcgCCGGACuuCUGCGAGGaGGAGGc -3'
miRNA:   3'- caCCG---GGUCUG--GGCGCUCCaUCUCCu -5'
5884 5' -60.5 NC_001806.1 + 52578 0.66 0.681469
Target:  5'- aUGGCCagcGGCCCGgGGGGgcaucgcgcGGGGGGu -3'
miRNA:   3'- cACCGGgu-CUGGGCgCUCCa--------UCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 73298 0.66 0.681469
Target:  5'- --cGCCCuGGCCCGCGAGGUc----- -3'
miRNA:   3'- cacCGGGuCUGGGCGCUCCAucuccu -5'
5884 5' -60.5 NC_001806.1 + 89765 0.66 0.681469
Target:  5'- -cGGCUgAuGACgCGCGGGGcgugGGAGGGg -3'
miRNA:   3'- caCCGGgU-CUGgGCGCUCCa---UCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 26687 0.66 0.678507
Target:  5'- -cGGCCCccaccgcccggcguGGGCCCG-GGGGgcGGGGc -3'
miRNA:   3'- caCCGGG--------------UCUGGGCgCUCCauCUCCu -5'
5884 5' -60.5 NC_001806.1 + 33125 0.67 0.661669
Target:  5'- -gGGCCCGGACCgC-CGcGGUcGGGGGc -3'
miRNA:   3'- caCCGGGUCUGG-GcGCuCCAuCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.