miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5885 5' -62.4 NC_001806.1 + 64965 0.66 0.676229
Target:  5'- gCCCGGGC-CGgGGgucccgGGGCAaacaUCCaGGg -3'
miRNA:   3'- gGGGCCCGuGCgCCa-----CUCGU----AGG-CCa -5'
5885 5' -62.4 NC_001806.1 + 129671 0.66 0.675264
Target:  5'- gCCCGGGC-CGCc--GAGCGgcccgucUCCGGa -3'
miRNA:   3'- gGGGCCCGuGCGccaCUCGU-------AGGCCa -5'
5885 5' -62.4 NC_001806.1 + 92942 0.66 0.666561
Target:  5'- gCCgGGGCccGCGCGcugauggacgccGUGGacgcGCAUCCGGg -3'
miRNA:   3'- gGGgCCCG--UGCGC------------CACU----CGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 44455 0.66 0.666561
Target:  5'- gCCCGGcGUcCGCGuG-GAGCAUgCGGa -3'
miRNA:   3'- gGGGCC-CGuGCGC-CaCUCGUAgGCCa -5'
5885 5' -62.4 NC_001806.1 + 41392 0.66 0.666561
Target:  5'- gCCCUGGGCGCggauGCGauccGUGAGCcgCCu-- -3'
miRNA:   3'- -GGGGCCCGUG----CGC----CACUCGuaGGcca -5'
5885 5' -62.4 NC_001806.1 + 22171 0.66 0.656868
Target:  5'- gCCUCGGGCGCcccgGCGGccgugUGGGCGcCCGa- -3'
miRNA:   3'- -GGGGCCCGUG----CGCC-----ACUCGUaGGCca -5'
5885 5' -62.4 NC_001806.1 + 15180 0.66 0.656868
Target:  5'- gCCCGGGgACuGgGGUaGGGUGUCaCGGg -3'
miRNA:   3'- gGGGCCCgUG-CgCCA-CUCGUAG-GCCa -5'
5885 5' -62.4 NC_001806.1 + 86741 0.66 0.656868
Target:  5'- gCCCGGGgGCGCGcauGUcGGCcgccUCCGGg -3'
miRNA:   3'- gGGGCCCgUGCGC---CAcUCGu---AGGCCa -5'
5885 5' -62.4 NC_001806.1 + 41846 0.66 0.656868
Target:  5'- gCCCCGGGCGCGUacGUgcGAGCGcgCaGGUa -3'
miRNA:   3'- -GGGGCCCGUGCGc-CA--CUCGUa-GgCCA- -5'
5885 5' -62.4 NC_001806.1 + 49368 0.66 0.656868
Target:  5'- gCCCCGGGCccgAUGCGGcccGuAGCcagUCGGUg -3'
miRNA:   3'- -GGGGCCCG---UGCGCCa--C-UCGua-GGCCA- -5'
5885 5' -62.4 NC_001806.1 + 77502 0.66 0.656868
Target:  5'- gCCgGGGCGaggcguaccUGCGaGUGAGCGgaggcCCGGg -3'
miRNA:   3'- gGGgCCCGU---------GCGC-CACUCGUa----GGCCa -5'
5885 5' -62.4 NC_001806.1 + 83243 0.66 0.656868
Target:  5'- cCCCCucaaGGGCcCGCGGggGGGCGggcgaCGGa -3'
miRNA:   3'- -GGGG----CCCGuGCGCCa-CUCGUag---GCCa -5'
5885 5' -62.4 NC_001806.1 + 123513 0.66 0.647157
Target:  5'- aCCUCGauccGGCGCuuGGUGAGCGcCUGGa -3'
miRNA:   3'- -GGGGC----CCGUGcgCCACUCGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 133005 0.66 0.647157
Target:  5'- gCCCUGGGC-CGgGGccgucuugGAGCGcCUGGUc -3'
miRNA:   3'- -GGGGCCCGuGCgCCa-------CUCGUaGGCCA- -5'
5885 5' -62.4 NC_001806.1 + 79138 0.66 0.641324
Target:  5'- uCCUCGGGCggccguucgACGCcucccuccugucGGgggagcuauucccgGGGCAUCCGGUg -3'
miRNA:   3'- -GGGGCCCG---------UGCG------------CCa-------------CUCGUAGGCCA- -5'
5885 5' -62.4 NC_001806.1 + 69123 0.66 0.637435
Target:  5'- cCCCCGGGgACGCuaauGGcGcGCGUgCGGa -3'
miRNA:   3'- -GGGGCCCgUGCG----CCaCuCGUAgGCCa -5'
5885 5' -62.4 NC_001806.1 + 84253 0.66 0.627709
Target:  5'- -gCCGGGgGCGCGG-GcGCA-CCGGc -3'
miRNA:   3'- ggGGCCCgUGCGCCaCuCGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 62837 0.66 0.627709
Target:  5'- gCgCCGaGGCG-GCGGUGGGCAUCagcgcgacaaacUGGUg -3'
miRNA:   3'- -GgGGC-CCGUgCGCCACUCGUAG------------GCCA- -5'
5885 5' -62.4 NC_001806.1 + 27845 0.66 0.627709
Target:  5'- uCCCCGGGgAcggggccgcccCGCGGUGGGCcugccucccCUGGg -3'
miRNA:   3'- -GGGGCCCgU-----------GCGCCACUCGua-------GGCCa -5'
5885 5' -62.4 NC_001806.1 + 24670 0.66 0.627709
Target:  5'- gCUgGGGCGCgagGCGGUGcGCG-CCGGc -3'
miRNA:   3'- gGGgCCCGUG---CGCCACuCGUaGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.