miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5885 5' -62.4 NC_001806.1 + 96376 0.68 0.550546
Target:  5'- gCCaGGGCgcccccGCGCGG-GGGCG-CCGGUg -3'
miRNA:   3'- gGGgCCCG------UGCGCCaCUCGUaGGCCA- -5'
5885 5' -62.4 NC_001806.1 + 92942 0.66 0.666561
Target:  5'- gCCgGGGCccGCGCGcugauggacgccGUGGacgcGCAUCCGGg -3'
miRNA:   3'- gGGgCCCG--UGCGC------------CACU----CGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 89086 0.67 0.560073
Target:  5'- aCCCCGGcGCGCuucucCGGggGGGCAUCCu-- -3'
miRNA:   3'- -GGGGCC-CGUGc----GCCa-CUCGUAGGcca -5'
5885 5' -62.4 NC_001806.1 + 86741 0.66 0.656868
Target:  5'- gCCCGGGgGCGCGcauGUcGGCcgccUCCGGg -3'
miRNA:   3'- gGGGCCCgUGCGC---CAcUCGu---AGGCCa -5'
5885 5' -62.4 NC_001806.1 + 84253 0.66 0.627709
Target:  5'- -gCCGGGgGCGCGG-GcGCA-CCGGc -3'
miRNA:   3'- ggGGCCCgUGCGCCaCuCGUaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 83243 0.66 0.656868
Target:  5'- cCCCCucaaGGGCcCGCGGggGGGCGggcgaCGGa -3'
miRNA:   3'- -GGGG----CCCGuGCGCCa-CUCGUag---GCCa -5'
5885 5' -62.4 NC_001806.1 + 83030 0.73 0.271679
Target:  5'- cCCCCGGGguCcUGGcGAGCGUCgCGGUg -3'
miRNA:   3'- -GGGGCCCguGcGCCaCUCGUAG-GCCA- -5'
5885 5' -62.4 NC_001806.1 + 81267 0.71 0.352975
Target:  5'- uCCCCGGGCcucACGgGGUcccGGGCGUCgaaGGUu -3'
miRNA:   3'- -GGGGCCCG---UGCgCCA---CUCGUAGg--CCA- -5'
5885 5' -62.4 NC_001806.1 + 80572 0.69 0.484622
Target:  5'- gCCCCaaaacGGGCAUGUagcacccGGgGAGUAUCCGGc -3'
miRNA:   3'- -GGGG-----CCCGUGCG-------CCaCUCGUAGGCCa -5'
5885 5' -62.4 NC_001806.1 + 79138 0.66 0.641324
Target:  5'- uCCUCGGGCggccguucgACGCcucccuccugucGGgggagcuauucccgGGGCAUCCGGUg -3'
miRNA:   3'- -GGGGCCCG---------UGCG------------CCa-------------CUCGUAGGCCA- -5'
5885 5' -62.4 NC_001806.1 + 78379 0.75 0.206128
Target:  5'- gCCCaGGCGCuggcgGCGGUGAGCGUCCucGGg -3'
miRNA:   3'- gGGGcCCGUG-----CGCCACUCGUAGG--CCa -5'
5885 5' -62.4 NC_001806.1 + 77502 0.66 0.656868
Target:  5'- gCCgGGGCGaggcguaccUGCGaGUGAGCGgaggcCCGGg -3'
miRNA:   3'- gGGgCCCGU---------GCGC-CACUCGUa----GGCCa -5'
5885 5' -62.4 NC_001806.1 + 77312 0.72 0.303589
Target:  5'- uUCCgGGGCGCGCGG-GAGCucAUCCa-- -3'
miRNA:   3'- -GGGgCCCGUGCGCCaCUCG--UAGGcca -5'
5885 5' -62.4 NC_001806.1 + 77108 0.67 0.588903
Target:  5'- gUCCUGGGCGCcaagaGCGccGAGCGggCCGGg -3'
miRNA:   3'- -GGGGCCCGUG-----CGCcaCUCGUa-GGCCa -5'
5885 5' -62.4 NC_001806.1 + 69123 0.66 0.637435
Target:  5'- cCCCCGGGgACGCuaauGGcGcGCGUgCGGa -3'
miRNA:   3'- -GGGGCCCgUGCG----CCaCuCGUAgGCCa -5'
5885 5' -62.4 NC_001806.1 + 67520 0.68 0.50376
Target:  5'- gCCCUGGGCcguCGCGGcGAGagAUCgGGg -3'
miRNA:   3'- -GGGGCCCGu--GCGCCaCUCg-UAGgCCa -5'
5885 5' -62.4 NC_001806.1 + 66861 0.72 0.338303
Target:  5'- gCCCGGGCACacgGCGGUGAcGCucgcuagcucGUCCuGGg -3'
miRNA:   3'- gGGGCCCGUG---CGCCACU-CG----------UAGG-CCa -5'
5885 5' -62.4 NC_001806.1 + 65661 0.67 0.588903
Target:  5'- cCCCUGGGUggcuGCGCuG-GGGCcgCCGGc -3'
miRNA:   3'- -GGGGCCCG----UGCGcCaCUCGuaGGCCa -5'
5885 5' -62.4 NC_001806.1 + 64965 0.66 0.676229
Target:  5'- gCCCGGGC-CGgGGgucccgGGGCAaacaUCCaGGg -3'
miRNA:   3'- gGGGCCCGuGCgCCa-----CUCGU----AGG-CCa -5'
5885 5' -62.4 NC_001806.1 + 62925 0.66 0.627709
Target:  5'- cCCUCGuaC-CGCGGccGGGCGUCCGGa -3'
miRNA:   3'- -GGGGCccGuGCGCCa-CUCGUAGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.