miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5893 3' -66.3 NC_001806.1 + 102958 0.66 0.483322
Target:  5'- cCCggggGCGCCCCCCCGucGcccccacccgccGGCUCAu -3'
miRNA:   3'- cGGag--CGCGGGGGGGCucC------------CCGAGUc -5'
5893 3' -66.3 NC_001806.1 + 147166 0.66 0.474515
Target:  5'- aCCgaCG-GCCCCgCCCGAGGaGGCggaagCGGa -3'
miRNA:   3'- cGGa-GCgCGGGG-GGGCUCC-CCGa----GUC- -5'
5893 3' -66.3 NC_001806.1 + 39814 0.66 0.474515
Target:  5'- --gUUGCGCCagCCCCCGuuggGGGGGUgcgUCGGg -3'
miRNA:   3'- cggAGCGCGG--GGGGGC----UCCCCG---AGUC- -5'
5893 3' -66.3 NC_001806.1 + 3529 0.66 0.474515
Target:  5'- --gUCGuCGCCCCCCgCG-GGGGaggCGGg -3'
miRNA:   3'- cggAGC-GCGGGGGG-GCuCCCCga-GUC- -5'
5893 3' -66.3 NC_001806.1 + 50477 0.66 0.472763
Target:  5'- uGUUUCGCGCCCugccccugggaagCCCCGcggucguGGGGGC-CGa -3'
miRNA:   3'- -CGGAGCGCGGG-------------GGGGC-------UCCCCGaGUc -5'
5893 3' -66.3 NC_001806.1 + 4385 0.66 0.465788
Target:  5'- uCCUCGcCGCCgCCC---GGGGCUUGGg -3'
miRNA:   3'- cGGAGC-GCGGgGGGgcuCCCCGAGUC- -5'
5893 3' -66.3 NC_001806.1 + 86366 0.66 0.46492
Target:  5'- --gUCGCGCCagccacuCCUCCGcGGGGcGCUCGGc -3'
miRNA:   3'- cggAGCGCGG-------GGGGGC-UCCC-CGAGUC- -5'
5893 3' -66.3 NC_001806.1 + 30612 0.66 0.435087
Target:  5'- gGCgaCGCaCCCCCCCuccgacucagggccgGGGGGGCgCGGc -3'
miRNA:   3'- -CGgaGCGcGGGGGGG---------------CUCCCCGaGUC- -5'
5893 3' -66.3 NC_001806.1 + 119629 0.67 0.423468
Target:  5'- gGCCccaGCGCCCCacgggCCCG-GGGGCg--- -3'
miRNA:   3'- -CGGag-CGCGGGG-----GGGCuCCCCGaguc -5'
5893 3' -66.3 NC_001806.1 + 30271 0.67 0.423468
Target:  5'- gGCCccCGCGCCccggCCCCCGGGGcGGagcCGGc -3'
miRNA:   3'- -CGGa-GCGCGG----GGGGGCUCC-CCga-GUC- -5'
5893 3' -66.3 NC_001806.1 + 17158 0.67 0.422645
Target:  5'- uGCCggUCGCuccaaggGCCCCCCCGGGaaggcGGGuCUguGg -3'
miRNA:   3'- -CGG--AGCG-------CGGGGGGGCUC-----CCC-GAguC- -5'
5893 3' -66.3 NC_001806.1 + 13630 0.67 0.415282
Target:  5'- cGCCUggaugugguacaCGCGCCggaCCCCCGGaGGGUcggUCAGc -3'
miRNA:   3'- -CGGA------------GCGCGG---GGGGGCUcCCCG---AGUC- -5'
5893 3' -66.3 NC_001806.1 + 80313 0.67 0.414469
Target:  5'- cGCCcaccacaUCuGCGCgCCCCCG-GGGGCauuugaccgUCAGc -3'
miRNA:   3'- -CGG-------AG-CGCGgGGGGGCuCCCCG---------AGUC- -5'
5893 3' -66.3 NC_001806.1 + 89088 0.67 0.407195
Target:  5'- cCCggCGCGCUUCUCCGGGGGGgcaucCUCGu -3'
miRNA:   3'- cGGa-GCGCGGGGGGGCUCCCC-----GAGUc -5'
5893 3' -66.3 NC_001806.1 + 26965 0.67 0.407195
Target:  5'- cGCCUggCGCGCCgcggcucgugggCCCgCGAGcgggccgaccGGGCUCGGu -3'
miRNA:   3'- -CGGA--GCGCGG------------GGGgGCUC----------CCCGAGUC- -5'
5893 3' -66.3 NC_001806.1 + 72480 0.67 0.399207
Target:  5'- gGCCaUCaCGCaCCCCCUGcGGGGCgagaucgCGGg -3'
miRNA:   3'- -CGG-AGcGCG-GGGGGGCuCCCCGa------GUC- -5'
5893 3' -66.3 NC_001806.1 + 89030 0.67 0.399207
Target:  5'- cGCgCUCGU-CCCCCCCGcaguacaccuuGGGGGCg--- -3'
miRNA:   3'- -CG-GAGCGcGGGGGGGC-----------UCCCCGaguc -5'
5893 3' -66.3 NC_001806.1 + 119026 0.67 0.383536
Target:  5'- cGCCguggcggCGCuGCgCCUUgCGuGGGGCUCGGg -3'
miRNA:   3'- -CGGa------GCG-CG-GGGGgGCuCCCCGAGUC- -5'
5893 3' -66.3 NC_001806.1 + 42390 0.67 0.383536
Target:  5'- gGCCccCGCGCCCCCCagaCGcuGGGCcugaagCAGg -3'
miRNA:   3'- -CGGa-GCGCGGGGGG---GCucCCCGa-----GUC- -5'
5893 3' -66.3 NC_001806.1 + 18507 0.68 0.375855
Target:  5'- gGCUggGaGCCCUCCUGGGGGGUcCAGu -3'
miRNA:   3'- -CGGagCgCGGGGGGGCUCCCCGaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.