miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5898 5' -58 NC_001806.1 + 134645 0.66 0.84778
Target:  5'- gGCUgUgCACGUGGUCCucguUGGCCg -3'
miRNA:   3'- -CGAaAgGUGCGCCAGGucguGCCGGa -5'
5898 5' -58 NC_001806.1 + 42966 0.66 0.84778
Target:  5'- uCUUgCUcCGUGGgcccgUCGGCACGGCCa -3'
miRNA:   3'- cGAAaGGuGCGCCa----GGUCGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 135551 0.66 0.84778
Target:  5'- gGCUgccgcaUCCAC-CGGUCaCGGacuCGGCCg -3'
miRNA:   3'- -CGAa-----AGGUGcGCCAG-GUCgu-GCCGGa -5'
5898 5' -58 NC_001806.1 + 119884 0.66 0.839813
Target:  5'- cGCccUCCGCuGCuGUCCucGGCGCuGGCCa -3'
miRNA:   3'- -CGaaAGGUG-CGcCAGG--UCGUG-CCGGa -5'
5898 5' -58 NC_001806.1 + 92327 0.66 0.839813
Target:  5'- gGCUaUCUGCGCcc-CCAGCcuaACGGCCg -3'
miRNA:   3'- -CGAaAGGUGCGccaGGUCG---UGCCGGa -5'
5898 5' -58 NC_001806.1 + 43533 0.66 0.839813
Target:  5'- gGCg--CCugGCGGacaCguGUAUGGCCa -3'
miRNA:   3'- -CGaaaGGugCGCCa--GguCGUGCCGGa -5'
5898 5' -58 NC_001806.1 + 148104 0.66 0.831662
Target:  5'- cGCUgUCCGagcCGCGG-CCGGCugGGg-- -3'
miRNA:   3'- -CGAaAGGU---GCGCCaGGUCGugCCgga -5'
5898 5' -58 NC_001806.1 + 144348 0.66 0.831662
Target:  5'- cGCc--CCGCGcCGGUCCAuuaagggcGCGCGuGCCc -3'
miRNA:   3'- -CGaaaGGUGC-GCCAGGU--------CGUGC-CGGa -5'
5898 5' -58 NC_001806.1 + 109168 0.66 0.831662
Target:  5'- ---gUCgGCGCGGggcuccUCCAGCGCccGGUCUg -3'
miRNA:   3'- cgaaAGgUGCGCC------AGGUCGUG--CCGGA- -5'
5898 5' -58 NC_001806.1 + 61527 0.66 0.831662
Target:  5'- aGCccguaCACGCGGUCgGGCGgGGgCUu -3'
miRNA:   3'- -CGaaag-GUGCGCCAGgUCGUgCCgGA- -5'
5898 5' -58 NC_001806.1 + 131959 0.66 0.830838
Target:  5'- cGCgugcgUCCugGCGGcCCuggAGCGCcagaccgGGCCg -3'
miRNA:   3'- -CGaa---AGGugCGCCaGG---UCGUG-------CCGGa -5'
5898 5' -58 NC_001806.1 + 91143 0.66 0.826686
Target:  5'- ---cUCCGCGUGGccgcuguucgagggCCAGgaCACGGCCg -3'
miRNA:   3'- cgaaAGGUGCGCCa-------------GGUC--GUGCCGGa -5'
5898 5' -58 NC_001806.1 + 24010 0.66 0.823334
Target:  5'- cCUggCCAaccggcugUGCGGgCCGGaCACGGCCg -3'
miRNA:   3'- cGAaaGGU--------GCGCCaGGUC-GUGCCGGa -5'
5898 5' -58 NC_001806.1 + 145726 0.66 0.806178
Target:  5'- cCUggCCGCGCGGgu--GCGCGuGCCUu -3'
miRNA:   3'- cGAaaGGUGCGCCagguCGUGC-CGGA- -5'
5898 5' -58 NC_001806.1 + 134913 0.66 0.806178
Target:  5'- ----aCCAggcUGCGGUCCccGGCgAUGGCCUg -3'
miRNA:   3'- cgaaaGGU---GCGCCAGG--UCG-UGCCGGA- -5'
5898 5' -58 NC_001806.1 + 105956 0.66 0.806178
Target:  5'- ----aCCGCGCGGauuUCUGGCGCcGCCg -3'
miRNA:   3'- cgaaaGGUGCGCC---AGGUCGUGcCGGa -5'
5898 5' -58 NC_001806.1 + 147746 0.67 0.797364
Target:  5'- cGCgggggCGCGCgGGUCCcGaCGCGGCCg -3'
miRNA:   3'- -CGaaag-GUGCG-CCAGGuC-GUGCCGGa -5'
5898 5' -58 NC_001806.1 + 52720 0.67 0.797364
Target:  5'- gGCg--CCGCGCGGa-CGGCGCggGGCCc -3'
miRNA:   3'- -CGaaaGGUGCGCCagGUCGUG--CCGGa -5'
5898 5' -58 NC_001806.1 + 133265 0.67 0.797364
Target:  5'- uGCUUagggCCaACGCcGUCCGGCuGCGGCa- -3'
miRNA:   3'- -CGAAa---GG-UGCGcCAGGUCG-UGCCGga -5'
5898 5' -58 NC_001806.1 + 128524 0.67 0.797364
Target:  5'- gGCauggCCAUGCGGgccgcagCCAGacgGCGGCCc -3'
miRNA:   3'- -CGaaa-GGUGCGCCa------GGUCg--UGCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.