miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 3' -62.2 NC_001806.1 + 127197 0.66 0.685865
Target:  5'- -aUgCGCGGGGuuaCGCGGGccCCGGGg -3'
miRNA:   3'- ucAgGCGUCCUcg-GCGCCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 12912 0.66 0.685865
Target:  5'- gGGUCCuccaAGaGGGCCGaauccucgGGGUcuUCCGGGg -3'
miRNA:   3'- -UCAGGcg--UC-CUCGGCg-------CCCA--AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 9187 0.66 0.685865
Target:  5'- uAG-CC-CGGGGGUCGCGGGUguggCgaGGGc -3'
miRNA:   3'- -UCaGGcGUCCUCGGCGCCCAa---Gg-CCC- -5'
5902 3' -62.2 NC_001806.1 + 150872 0.66 0.676229
Target:  5'- cGGcUCCGCGGGccagGGCC-CGGGca-CGGGc -3'
miRNA:   3'- -UC-AGGCGUCC----UCGGcGCCCaagGCCC- -5'
5902 3' -62.2 NC_001806.1 + 2764 0.66 0.666561
Target:  5'- cGGggCGCGGGcgggccugcGCCGCGGcGgcCCGGGg -3'
miRNA:   3'- -UCagGCGUCCu--------CGGCGCC-CaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 86039 0.66 0.666561
Target:  5'- gGG-CCGCGGGGGggGCGGGcucgUCCccuGGGg -3'
miRNA:   3'- -UCaGGCGUCCUCggCGCCCa---AGG---CCC- -5'
5902 3' -62.2 NC_001806.1 + 35272 0.66 0.666561
Target:  5'- ---gCGCGGGAGUCGUGGcUUUgGGGc -3'
miRNA:   3'- ucagGCGUCCUCGGCGCCcAAGgCCC- -5'
5902 3' -62.2 NC_001806.1 + 31302 0.66 0.656868
Target:  5'- uGGUCCG-GGGAGCaGgGGGcgucgacCCGGGa -3'
miRNA:   3'- -UCAGGCgUCCUCGgCgCCCaa-----GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 102165 0.66 0.656868
Target:  5'- cGUUCGCgAGGAGCCGCuGGauaacgCCcaGGGc -3'
miRNA:   3'- uCAGGCG-UCCUCGGCGcCCaa----GG--CCC- -5'
5902 3' -62.2 NC_001806.1 + 30637 0.66 0.656868
Target:  5'- gGG-CCGgGGGGGCgCGgccaGGGUgggcCCGGGa -3'
miRNA:   3'- -UCaGGCgUCCUCG-GCg---CCCAa---GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 57736 0.66 0.656868
Target:  5'- -uUCCGCuccgggcgucuGGAGCgGCGGGa--CGGGc -3'
miRNA:   3'- ucAGGCGu----------CCUCGgCGCCCaagGCCC- -5'
5902 3' -62.2 NC_001806.1 + 114646 0.66 0.647157
Target:  5'- cGUCCGCGaGAG-CGCGG---CCGGGg -3'
miRNA:   3'- uCAGGCGUcCUCgGCGCCcaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 151289 0.66 0.647157
Target:  5'- gGGgCCGgGGGgcGGCgGCGGuGggCCGGGc -3'
miRNA:   3'- -UCaGGCgUCC--UCGgCGCC-CaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 45282 0.66 0.647157
Target:  5'- uAG-CgGCGGGAGaCGCGGGcccgCgCGGGg -3'
miRNA:   3'- -UCaGgCGUCCUCgGCGCCCaa--G-GCCC- -5'
5902 3' -62.2 NC_001806.1 + 148982 0.66 0.643269
Target:  5'- uGUCCgGCAGGucucGGUCGCaGGGaaacacccagacaUCCGGGg -3'
miRNA:   3'- uCAGG-CGUCC----UCGGCG-CCCa------------AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 4449 0.66 0.637435
Target:  5'- cGUCCGCccGGGGGCUGCcGGcgCCGc- -3'
miRNA:   3'- uCAGGCG--UCCUCGGCGcCCaaGGCcc -5'
5902 3' -62.2 NC_001806.1 + 133250 0.66 0.637435
Target:  5'- cGG-CCGUGGGAGCCGUgcuuaGGGccaacgccgUCCGGc -3'
miRNA:   3'- -UCaGGCGUCCUCGGCG-----CCCa--------AGGCCc -5'
5902 3' -62.2 NC_001806.1 + 138835 0.67 0.627709
Target:  5'- ----aGCAacuGGGGCCGCGGGa--CGGGg -3'
miRNA:   3'- ucaggCGU---CCUCGGCGCCCaagGCCC- -5'
5902 3' -62.2 NC_001806.1 + 32945 0.67 0.627709
Target:  5'- gGG-CCGUuguGGGGCCcCGGG--CCGGGg -3'
miRNA:   3'- -UCaGGCGu--CCUCGGcGCCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 5480 0.67 0.627709
Target:  5'- uAGUCC-CAGGGGCCGgCGGGaa--GGa -3'
miRNA:   3'- -UCAGGcGUCCUCGGC-GCCCaaggCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.