miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 3' -62.2 NC_001806.1 + 131819 0.67 0.598577
Target:  5'- --aCCGCGacGGAGCUGCGGGaUuucuacggcUCCGcGGa -3'
miRNA:   3'- ucaGGCGU--CCUCGGCGCCC-A---------AGGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 130452 0.7 0.42439
Target:  5'- -aUCUaCGGGAGCUGCGGug-CCGGGa -3'
miRNA:   3'- ucAGGcGUCCUCGGCGCCcaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 127593 0.67 0.598577
Target:  5'- cGUCgGgCAGGuGCCGCGGGUguuguaUCUuGGc -3'
miRNA:   3'- uCAGgC-GUCCuCGGCGCCCA------AGGcCC- -5'
5902 3' -62.2 NC_001806.1 + 127197 0.66 0.685865
Target:  5'- -aUgCGCGGGGuuaCGCGGGccCCGGGg -3'
miRNA:   3'- ucAgGCGUCCUcg-GCGCCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 114646 0.66 0.647157
Target:  5'- cGUCCGCGaGAG-CGCGG---CCGGGg -3'
miRNA:   3'- uCAGGCGUcCUCgGCGCCcaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 107038 0.74 0.248137
Target:  5'- cGcCCGCGGG-GCCGCGGGcugugCCGcGGa -3'
miRNA:   3'- uCaGGCGUCCuCGGCGCCCaa---GGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 105097 0.69 0.494605
Target:  5'- -aUCUGCAGG-GCgGCGGGUcguggCGGGa -3'
miRNA:   3'- ucAGGCGUCCuCGgCGCCCAag---GCCC- -5'
5902 3' -62.2 NC_001806.1 + 103542 0.68 0.55721
Target:  5'- --cUCGCGGGGGCCGCuuaagcggugguuaGGGUUUgucugacgCGGGg -3'
miRNA:   3'- ucaGGCGUCCUCGGCG--------------CCCAAG--------GCCC- -5'
5902 3' -62.2 NC_001806.1 + 102165 0.66 0.656868
Target:  5'- cGUUCGCgAGGAGCCGCuGGauaacgCCcaGGGc -3'
miRNA:   3'- uCAGGCG-UCCUCGGCGcCCaa----GG--CCC- -5'
5902 3' -62.2 NC_001806.1 + 100384 0.69 0.485526
Target:  5'- cGUCgC-CGGGcGgCGCGGGggCCGGGg -3'
miRNA:   3'- uCAG-GcGUCCuCgGCGCCCaaGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 99931 0.68 0.550546
Target:  5'- uGGUCC-CGGGAGaaugGCGGGccgcgcgCCGGGa -3'
miRNA:   3'- -UCAGGcGUCCUCgg--CGCCCaa-----GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 93890 0.73 0.277838
Target:  5'- gGGcCCGCGGGAgGCCGCcccgaagagGGGgaccCCGGGg -3'
miRNA:   3'- -UCaGGCGUCCU-CGGCG---------CCCaa--GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 92912 0.67 0.598577
Target:  5'- uGGUCCGCgcAGG-GCgggGCGGGccuggaggCCGGGg -3'
miRNA:   3'- -UCAGGCG--UCCuCGg--CGCCCaa------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 88628 0.74 0.235923
Target:  5'- uGGUCCGCGGaGAuGCCGCGGaacgacgcgcCCGGGg -3'
miRNA:   3'- -UCAGGCGUC-CU-CGGCGCCcaa-------GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 86039 0.66 0.666561
Target:  5'- gGG-CCGCGGGGGggGCGGGcucgUCCccuGGGg -3'
miRNA:   3'- -UCaGGCGUCCUCggCGCCCa---AGG---CCC- -5'
5902 3' -62.2 NC_001806.1 + 85746 0.71 0.375814
Target:  5'- cGGUCC---GGAGCCGCGcGGccacgucgUCCGGGg -3'
miRNA:   3'- -UCAGGcguCCUCGGCGC-CCa-------AGGCCC- -5'
5902 3' -62.2 NC_001806.1 + 84458 0.68 0.569645
Target:  5'- gAGcCUGCuucGGGCCGCGGGgcCCGaGGc -3'
miRNA:   3'- -UCaGGCGuc-CUCGGCGCCCaaGGC-CC- -5'
5902 3' -62.2 NC_001806.1 + 82731 0.72 0.338303
Target:  5'- gGGUCUGCGGG-GCgGCGGcGUcgUCGGGc -3'
miRNA:   3'- -UCAGGCGUCCuCGgCGCC-CAa-GGCCC- -5'
5902 3' -62.2 NC_001806.1 + 73050 0.71 0.375814
Target:  5'- --cCCGUcGGGGCCGCGGuccccgccuccGUUCCGGa -3'
miRNA:   3'- ucaGGCGuCCUCGGCGCC-----------CAAGGCCc -5'
5902 3' -62.2 NC_001806.1 + 71801 0.71 0.375814
Target:  5'- cAGUUCGCGcccgaccuGGAGCCGgGGGggUCGGu -3'
miRNA:   3'- -UCAGGCGU--------CCUCGGCgCCCaaGGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.