miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 5' -52.9 NC_001806.1 + 123774 0.66 0.979184
Target:  5'- aGCGGccccucucuccAGGACGCCGccGuCUCCCGCUCc -3'
miRNA:   3'- gUGCU-----------UUUUGUGGUacC-GAGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 140535 0.66 0.979184
Target:  5'- aCACGggG-ACGgCggGGCagagccgCCCGUCCg -3'
miRNA:   3'- -GUGCuuUuUGUgGuaCCGa------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 116173 0.66 0.979184
Target:  5'- uGCGAAGGGCGg-GUGGUauUCCUGCCg -3'
miRNA:   3'- gUGCUUUUUGUggUACCG--AGGGCGGg -5'
5902 5' -52.9 NC_001806.1 + 67599 0.66 0.979184
Target:  5'- gGgGggGAGuuCCAcGGUacUCCCGCCCc -3'
miRNA:   3'- gUgCuuUUUguGGUaCCG--AGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 30244 0.66 0.979184
Target:  5'- uGCGugcGAGCGCCGccuccggGGC-CCgGCCCc -3'
miRNA:   3'- gUGCuu-UUUGUGGUa------CCGaGGgCGGG- -5'
5902 5' -52.9 NC_001806.1 + 21774 0.66 0.979184
Target:  5'- gGCGggGuccgucgagcgcGGCGCCGgcagcccccgGGCggacgccgccCCCGCCCg -3'
miRNA:   3'- gUGCuuU------------UUGUGGUa---------CCGa---------GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 134736 0.66 0.979184
Target:  5'- gACGucacauAGGCGuCCucgGGaCUCCCGUCCa -3'
miRNA:   3'- gUGCuu----UUUGU-GGua-CC-GAGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 122569 0.66 0.978723
Target:  5'- uUugGggGGGC-CCGUGGuCUCCgugaggcuggagGCCCg -3'
miRNA:   3'- -GugCuuUUUGuGGUACC-GAGGg-----------CGGG- -5'
5902 5' -52.9 NC_001806.1 + 23064 0.66 0.976805
Target:  5'- aGCGAGGc-CGCCGUGGC-CgCCGUgCg -3'
miRNA:   3'- gUGCUUUuuGUGGUACCGaG-GGCGgG- -5'
5902 5' -52.9 NC_001806.1 + 118954 0.66 0.976805
Target:  5'- uGCGuccAGCGCCGgggGGUuguucgucUCCCuGCCCg -3'
miRNA:   3'- gUGCuuuUUGUGGUa--CCG--------AGGG-CGGG- -5'
5902 5' -52.9 NC_001806.1 + 46432 0.66 0.976805
Target:  5'- cCGCGGucGGGCGCC-UGGCggCCaugcaUGCCCg -3'
miRNA:   3'- -GUGCUu-UUUGUGGuACCGa-GG-----GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 54903 0.66 0.976805
Target:  5'- uCACGguAGAgACUGUGGUgaaCCCGUCg -3'
miRNA:   3'- -GUGCuuUUUgUGGUACCGa--GGGCGGg -5'
5902 5' -52.9 NC_001806.1 + 113534 0.66 0.976805
Target:  5'- gCACGucuucuGCGCCcUGGC-CCgGCUCg -3'
miRNA:   3'- -GUGCuuuu--UGUGGuACCGaGGgCGGG- -5'
5902 5' -52.9 NC_001806.1 + 147518 0.66 0.976805
Target:  5'- cCGCgGGAGGGC-CCGUGcccaccCUCCaCGCCCg -3'
miRNA:   3'- -GUG-CUUUUUGuGGUACc-----GAGG-GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 148485 0.66 0.976805
Target:  5'- --aGAuAAAguCCAcGGCcgugCCCGCCCu -3'
miRNA:   3'- gugCUuUUUguGGUaCCGa---GGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 95894 0.66 0.976805
Target:  5'- aGCGucGAGAACGugg-GGCUCCUGCCg -3'
miRNA:   3'- gUGC--UUUUUGUgguaCCGAGGGCGGg -5'
5902 5' -52.9 NC_001806.1 + 132492 0.66 0.976805
Target:  5'- cCACGGuccACGCCGcccccggggcccUGGCcCCCGUCUu -3'
miRNA:   3'- -GUGCUuuuUGUGGU------------ACCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 146105 0.66 0.975285
Target:  5'- uCGCGGAAacuuAACACCcacacccaacccacuGUGGUUCUgGCuCCa -3'
miRNA:   3'- -GUGCUUU----UUGUGG---------------UACCGAGGgCG-GG- -5'
5902 5' -52.9 NC_001806.1 + 128043 0.66 0.974232
Target:  5'- gACGAu--GC-CCGUGGCggCCacgGCCCc -3'
miRNA:   3'- gUGCUuuuUGuGGUACCGa-GGg--CGGG- -5'
5902 5' -52.9 NC_001806.1 + 79542 0.66 0.974232
Target:  5'- aCGCGGccGGCGCCcgugGGCcCCCGCg- -3'
miRNA:   3'- -GUGCUuuUUGUGGua--CCGaGGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.