miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5902 5' -52.9 NC_001806.1 + 135763 0.72 0.790506
Target:  5'- uGCGGAAGGCcuggcgaaGCUgcGGCgCCCGCCCc -3'
miRNA:   3'- gUGCUUUUUG--------UGGuaCCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 134736 0.66 0.979184
Target:  5'- gACGucacauAGGCGuCCucgGGaCUCCCGUCCa -3'
miRNA:   3'- gUGCuu----UUUGU-GGua-CC-GAGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 132782 0.77 0.506749
Target:  5'- uGCGGGAGgcggugGCGCgGUGGCaUCCCGCCa -3'
miRNA:   3'- gUGCUUUU------UGUGgUACCG-AGGGCGGg -5'
5902 5' -52.9 NC_001806.1 + 132492 0.66 0.976805
Target:  5'- cCACGGuccACGCCGcccccggggcccUGGCcCCCGUCUu -3'
miRNA:   3'- -GUGCUuuuUGUGGU------------ACCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 132440 0.69 0.888104
Target:  5'- gGCGAGAAguucuccGCGCCGgcGCUCgUCGCCCu -3'
miRNA:   3'- gUGCUUUU-------UGUGGUacCGAG-GGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 132060 0.72 0.790506
Target:  5'- -uUGAGAGAgCGUCGUGGggCCCGCCCg -3'
miRNA:   3'- guGCUUUUU-GUGGUACCgaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 130790 0.71 0.812337
Target:  5'- uCugGGAGcuguugugccugugcAGCACCAUGGCcgCgCGCCUg -3'
miRNA:   3'- -GugCUUU---------------UUGUGGUACCGa-GgGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 130739 0.72 0.790506
Target:  5'- -cCGGAGAGCuggaGCuCGUGGC-CCUGCCCc -3'
miRNA:   3'- guGCUUUUUG----UG-GUACCGaGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 128043 0.66 0.974232
Target:  5'- gACGAu--GC-CCGUGGCggCCacgGCCCc -3'
miRNA:   3'- gUGCUuuuUGuGGUACCGa-GGg--CGGG- -5'
5902 5' -52.9 NC_001806.1 + 126870 0.71 0.826354
Target:  5'- cCugGAGGAcgGCGCCggGGCUCUCGgggccgcaggaCCCa -3'
miRNA:   3'- -GugCUUUU--UGUGGuaCCGAGGGC-----------GGG- -5'
5902 5' -52.9 NC_001806.1 + 126477 0.7 0.866991
Target:  5'- uGCGAuacuucGCGCCcgGGCgcgucCCCgGCCCg -3'
miRNA:   3'- gUGCUuuu---UGUGGuaCCGa----GGG-CGGG- -5'
5902 5' -52.9 NC_001806.1 + 125845 0.76 0.533713
Target:  5'- cCGCGGGcccccggccgccgcGGACGCCGUGGCgccCCgGCCCc -3'
miRNA:   3'- -GUGCUU--------------UUUGUGGUACCGa--GGgCGGG- -5'
5902 5' -52.9 NC_001806.1 + 125699 0.72 0.781151
Target:  5'- gCGCGGGuuGCugCGcGGCgUCCgCGCCCc -3'
miRNA:   3'- -GUGCUUuuUGugGUaCCG-AGG-GCGGG- -5'
5902 5' -52.9 NC_001806.1 + 125493 0.66 0.971457
Target:  5'- gACGAAAAGC-CCcgGGCcgCgUCGCCg -3'
miRNA:   3'- gUGCUUUUUGuGGuaCCGa-G-GGCGGg -5'
5902 5' -52.9 NC_001806.1 + 125315 0.67 0.950219
Target:  5'- gGCcGAGGACACCccucGUGGC-CCCgacaGCCCc -3'
miRNA:   3'- gUGcUUUUUGUGG----UACCGaGGG----CGGG- -5'
5902 5' -52.9 NC_001806.1 + 123774 0.66 0.979184
Target:  5'- aGCGGccccucucuccAGGACGCCGccGuCUCCCGCUCc -3'
miRNA:   3'- gUGCU-----------UUUUGUGGUacC-GAGGGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 122972 0.69 0.895603
Target:  5'- uCGCGAAAucuaaaaagGGCACuCGUagGGCaUCgCCGCCCa -3'
miRNA:   3'- -GUGCUUU---------UUGUG-GUA--CCG-AG-GGCGGG- -5'
5902 5' -52.9 NC_001806.1 + 122569 0.66 0.978723
Target:  5'- uUugGggGGGC-CCGUGGuCUCCgugaggcuggagGCCCg -3'
miRNA:   3'- -GugCuuUUUGuGGUACC-GAGGg-----------CGGG- -5'
5902 5' -52.9 NC_001806.1 + 122347 0.71 0.843213
Target:  5'- gACGAGAAACACgGUGGCgcgCUgGCg- -3'
miRNA:   3'- gUGCUUUUUGUGgUACCGa--GGgCGgg -5'
5902 5' -52.9 NC_001806.1 + 122104 0.67 0.965277
Target:  5'- gCugGAGgcAAACACgAUGGUacugcgcgaCCCGUCCg -3'
miRNA:   3'- -GugCUU--UUUGUGgUACCGa--------GGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.