miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 127743 0.66 0.445228
Target:  5'- cGGaauCCCGggcGGGCUGCCG-GGUGCGgGc -3'
miRNA:   3'- -CCg--GGGU---CCCGGCGGCgCCACGCgUc -5'
5911 5' -67.1 NC_001806.1 + 23254 0.66 0.445228
Target:  5'- cGGCCgCCGccGCCuccgccgcGCCGCGGgagggGCGCAa -3'
miRNA:   3'- -CCGG-GGUccCGG--------CGGCGCCa----CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 5950 0.66 0.445228
Target:  5'- cGCCCCaagggggcGGGGCCGCCG-GGUaaaagaagugaGaCGCGa -3'
miRNA:   3'- cCGGGG--------UCCCGGCGGCgCCA-----------C-GCGUc -5'
5911 5' -67.1 NC_001806.1 + 143124 0.66 0.445228
Target:  5'- uGGCUgCCGGGaGggGCCGCGGaUGgGCGGg -3'
miRNA:   3'- -CCGG-GGUCC-CggCGGCGCC-ACgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 79552 0.66 0.445228
Target:  5'- cGCCCguGGGCCcCCGCGacgacuuccgGCGCu- -3'
miRNA:   3'- cCGGGguCCCGGcGGCGCca--------CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 23151 0.66 0.436814
Target:  5'- aGCUCCGcGGCCGCCGCcgc-CGCGGa -3'
miRNA:   3'- cCGGGGUcCCGGCGGCGccacGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 24634 0.66 0.436814
Target:  5'- gGGCCUgGGcGcGCCGCUGCGGcccGUGUAc -3'
miRNA:   3'- -CCGGGgUC-C-CGGCGGCGCCa--CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 119604 0.66 0.436814
Target:  5'- aGCCCCccggcgGGGGCCGCUuuGUGGccccaGCGCc- -3'
miRNA:   3'- cCGGGG------UCCCGGCGG--CGCCa----CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 1706 0.66 0.436814
Target:  5'- uGGuCCCCGaGGCCGCCGCccGGccguccaGCGCc- -3'
miRNA:   3'- -CC-GGGGUcCCGGCGGCG--CCa------CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 23528 0.66 0.435977
Target:  5'- gGGCCCCGacccccuGGGCgGCUGgCGGcG-GCAGc -3'
miRNA:   3'- -CCGGGGU-------CCCGgCGGC-GCCaCgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 34282 0.66 0.435977
Target:  5'- gGGUCCCGGGGgCgggaugggguuuaGCgGCGGggggcgGCGCGc -3'
miRNA:   3'- -CCGGGGUCCCgG-------------CGgCGCCa-----CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 100534 0.66 0.435142
Target:  5'- uGGaCUCCGGGGCCccguucuuauacCCGCGcGccgGCGCGGa -3'
miRNA:   3'- -CC-GGGGUCCCGGc-----------GGCGC-Ca--CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 86443 0.66 0.428492
Target:  5'- aGGUCgaCCAGGGCCcuggaGgUGCGGUugauaaacGCGCAGu -3'
miRNA:   3'- -CCGG--GGUCCCGG-----CgGCGCCA--------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 305 0.66 0.428492
Target:  5'- cGGCCCCGccccccacGcCCGCCGCGcGcGCGCAc -3'
miRNA:   3'- -CCGGGGUcc------C-GGCGGCGC-CaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 26411 0.66 0.428492
Target:  5'- cGCCCCc-GGCCGCC-CGGgcccacggGCGCc- -3'
miRNA:   3'- cCGGGGucCCGGCGGcGCCa-------CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 152015 0.66 0.428492
Target:  5'- cGGCCCCGccccccacGcCCGCCGCGcGcGCGCAc -3'
miRNA:   3'- -CCGGGGUcc------C-GGCGGCGC-CaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 20889 0.66 0.428492
Target:  5'- cGCgCCGGGacGCCGauaCGCGGacgaaGCGCGGg -3'
miRNA:   3'- cCGgGGUCC--CGGCg--GCGCCa----CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 71035 0.66 0.420265
Target:  5'- aGCCCCGcGGCCGaCCGCGucGUGCu- -3'
miRNA:   3'- cCGGGGUcCCGGC-GGCGCcaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 39182 0.66 0.420265
Target:  5'- cGCCCCGGGGCgGCgGCcuugucUGCGUu- -3'
miRNA:   3'- cCGGGGUCCCGgCGgCGcc----ACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 81759 0.66 0.420265
Target:  5'- cGGcCCCCAGGacgagucCCGCCGCcaaaacgaGCGCGGg -3'
miRNA:   3'- -CC-GGGGUCCc------GGCGGCGcca-----CGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.