miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5922 5' -62 NC_001806.1 + 67061 0.65 0.656464
Target:  5'- cGUCGCGCgcgucguacgagGcgGCacaCGCCGCCaCCa -3'
miRNA:   3'- aCAGCGCGa-----------CuaCGg--GUGGCGGcGGa -5'
5922 5' -62 NC_001806.1 + 123003 0.66 0.648557
Target:  5'- -aUCGcCGCccauggUGAgGCCCGCCGaCGCCUc -3'
miRNA:   3'- acAGC-GCG------ACUaCGGGUGGCgGCGGA- -5'
5922 5' -62 NC_001806.1 + 23139 0.66 0.648557
Target:  5'- --cCGCGCc--UGCcgagcuccgcggCCGCCGCCGCCg -3'
miRNA:   3'- acaGCGCGacuACG------------GGUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 85280 0.66 0.648557
Target:  5'- gGUCGUGUUG--GCCgACCGCCacaacGCCc -3'
miRNA:   3'- aCAGCGCGACuaCGGgUGGCGG-----CGGa -5'
5922 5' -62 NC_001806.1 + 70127 0.66 0.647568
Target:  5'- cUGggCGCGCUGAUcaCCCuccucgaACCGgCCGCCc -3'
miRNA:   3'- -ACa-GCGCGACUAc-GGG-------UGGC-GGCGGa -5'
5922 5' -62 NC_001806.1 + 102293 0.66 0.638663
Target:  5'- aUGUCGUcgUGGUGCgCCA-CGCCGUCg -3'
miRNA:   3'- -ACAGCGcgACUACG-GGUgGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 33096 0.66 0.629754
Target:  5'- cGUCGCGUgccggcGAgcggguccggacgggGCCCggACCGCCGCg- -3'
miRNA:   3'- aCAGCGCGa-----CUa--------------CGGG--UGGCGGCGga -5'
5922 5' -62 NC_001806.1 + 134978 0.66 0.628764
Target:  5'- cGUCGCgGCggccaucccGGUGCCCgauGCCcCCGCCc -3'
miRNA:   3'- aCAGCG-CGa--------CUACGGG---UGGcGGCGGa -5'
5922 5' -62 NC_001806.1 + 106549 0.66 0.628764
Target:  5'- aUGcCGCGCUGGUGCgCGCgCGCUacggGCg- -3'
miRNA:   3'- -ACaGCGCGACUACGgGUG-GCGG----CGga -5'
5922 5' -62 NC_001806.1 + 79675 0.66 0.628764
Target:  5'- gGUCGCGCgcgcGCCgaCACCGCCGg-- -3'
miRNA:   3'- aCAGCGCGacuaCGG--GUGGCGGCgga -5'
5922 5' -62 NC_001806.1 + 125837 0.66 0.618867
Target:  5'- cUGaCGCGCcGcggGCCCccgGCCGCCGCg- -3'
miRNA:   3'- -ACaGCGCGaCua-CGGG---UGGCGGCGga -5'
5922 5' -62 NC_001806.1 + 60458 0.66 0.60898
Target:  5'- -cUCGCGCUccacgGAaaccagGCCCccuCUGCCGCCg -3'
miRNA:   3'- acAGCGCGA-----CUa-----CGGGu--GGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 101839 0.66 0.60898
Target:  5'- ---gGCGgUGAggcGCaCCAgCGCCGCCUg -3'
miRNA:   3'- acagCGCgACUa--CG-GGUgGCGGCGGA- -5'
5922 5' -62 NC_001806.1 + 16499 0.66 0.60898
Target:  5'- cGcCGCgGCUGAUgGCUCGa-GCCGCCUc -3'
miRNA:   3'- aCaGCG-CGACUA-CGGGUggCGGCGGA- -5'
5922 5' -62 NC_001806.1 + 38388 0.66 0.60898
Target:  5'- gGUCGuCGCgGcgGCUCuCCGCCGgCUc -3'
miRNA:   3'- aCAGC-GCGaCuaCGGGuGGCGGCgGA- -5'
5922 5' -62 NC_001806.1 + 18828 0.66 0.60898
Target:  5'- gUGUUGCGCaggUGcAUGCCCcagguuCCGCCGgacaCCUg -3'
miRNA:   3'- -ACAGCGCG---AC-UACGGGu-----GGCGGC----GGA- -5'
5922 5' -62 NC_001806.1 + 51732 0.66 0.599109
Target:  5'- cGU-GCuGCUGcgGCCCACCcuGgCGCCa -3'
miRNA:   3'- aCAgCG-CGACuaCGGGUGG--CgGCGGa -5'
5922 5' -62 NC_001806.1 + 37689 0.66 0.599109
Target:  5'- -cUCuCGCUGAUGCgguCgACCGCCGCg- -3'
miRNA:   3'- acAGcGCGACUACG---GgUGGCGGCGga -5'
5922 5' -62 NC_001806.1 + 63262 0.66 0.599109
Target:  5'- cGUCGCGgaGccGCCCAaagucaaaCGuCUGCCUg -3'
miRNA:   3'- aCAGCGCgaCuaCGGGUg-------GC-GGCGGA- -5'
5922 5' -62 NC_001806.1 + 115507 0.67 0.589261
Target:  5'- gGUUcgGCGgUGuccacGgCCACCGCCGCCa -3'
miRNA:   3'- aCAG--CGCgACua---CgGGUGGCGGCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.