miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5925 5' -60.4 NC_001806.1 + 149253 0.66 0.74309
Target:  5'- aGUCgggGGUCCCAcGGCGUCccccaaauauGGCGGGCGGc -3'
miRNA:   3'- -UAGg--CUAGGGU-CCGCGG----------CUGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 64864 0.66 0.74309
Target:  5'- cUCCGcgcGUCCCGGGC-CaCGGCGGGauCGGc -3'
miRNA:   3'- uAGGC---UAGGGUCCGcG-GCUGCCU--GUC- -5'
5925 5' -60.4 NC_001806.1 + 30379 0.66 0.74309
Target:  5'- aGUCUG-UgCCGGGCGCgugCGACGGugGc -3'
miRNA:   3'- -UAGGCuAgGGUCCGCG---GCUGCCugUc -5'
5925 5' -60.4 NC_001806.1 + 147676 0.66 0.733605
Target:  5'- cUCCGc-CCCGGGgGCCGgggcGCGGggGCGGg -3'
miRNA:   3'- uAGGCuaGGGUCCgCGGC----UGCC--UGUC- -5'
5925 5' -60.4 NC_001806.1 + 2784 0.66 0.733605
Target:  5'- -gCCGcggcggCCCgGGGCGCCG-CGGGCuGg -3'
miRNA:   3'- uaGGCua----GGG-UCCGCGGCuGCCUGuC- -5'
5925 5' -60.4 NC_001806.1 + 68604 0.66 0.733605
Target:  5'- gGUCCGcGUCcgCCAGuGCGCCGuggagUGGAUAGa -3'
miRNA:   3'- -UAGGC-UAG--GGUC-CGCGGCu----GCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 150989 0.66 0.733605
Target:  5'- --aCGAgCCgCGGcGCGCCaGGCGGGCGGc -3'
miRNA:   3'- uagGCUaGG-GUC-CGCGG-CUGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 151254 0.66 0.724037
Target:  5'- -cCCGcccCCCGGGCccacGCCGgGCGGugGGg -3'
miRNA:   3'- uaGGCua-GGGUCCG----CGGC-UGCCugUC- -5'
5925 5' -60.4 NC_001806.1 + 43505 0.66 0.721152
Target:  5'- -gCCGuggcggCCCAucaggacaagaugcGGCGCCuGGCGGACAc -3'
miRNA:   3'- uaGGCua----GGGU--------------CCGCGG-CUGCCUGUc -5'
5925 5' -60.4 NC_001806.1 + 141907 0.66 0.714394
Target:  5'- gGUCCaGUCCagAGGCGCCGA-GGucgccGCAGg -3'
miRNA:   3'- -UAGGcUAGGg-UCCGCGGCUgCC-----UGUC- -5'
5925 5' -60.4 NC_001806.1 + 4747 0.66 0.694918
Target:  5'- -gCCGGggCCCGGuCGCCGGCGGcguCGGc -3'
miRNA:   3'- uaGGCUa-GGGUCcGCGGCUGCCu--GUC- -5'
5925 5' -60.4 NC_001806.1 + 23532 0.67 0.685102
Target:  5'- -cCCGAcCCCcuGGGCgGCUGGCGGcgGCAGc -3'
miRNA:   3'- uaGGCUaGGG--UCCG-CGGCUGCC--UGUC- -5'
5925 5' -60.4 NC_001806.1 + 62825 0.67 0.685102
Target:  5'- cGUCCGAgaucugcgCCgAGGCGgCGGUGGGCAu -3'
miRNA:   3'- -UAGGCUa-------GGgUCCGCgGCUGCCUGUc -5'
5925 5' -60.4 NC_001806.1 + 21137 0.67 0.685102
Target:  5'- -cCCGGcucCCCGGGCcccaCCGACGGGCc- -3'
miRNA:   3'- uaGGCUa--GGGUCCGc---GGCUGCCUGuc -5'
5925 5' -60.4 NC_001806.1 + 20084 0.67 0.685102
Target:  5'- -gCCGcUCCCGucguucguggccGGCGCCGucuGCGGGCGu -3'
miRNA:   3'- uaGGCuAGGGU------------CCGCGGC---UGCCUGUc -5'
5925 5' -60.4 NC_001806.1 + 95422 0.67 0.685102
Target:  5'- -aCCGucgCCgCGGGC-CCGGgGGGCAGg -3'
miRNA:   3'- uaGGCua-GG-GUCCGcGGCUgCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 3585 0.67 0.675243
Target:  5'- ---gGAUCCCcgcGGCGCCGuacccgGCGGGCAc -3'
miRNA:   3'- uaggCUAGGGu--CCGCGGC------UGCCUGUc -5'
5925 5' -60.4 NC_001806.1 + 59869 0.67 0.675243
Target:  5'- --aCGAcggCCCAGGC-CgGACGGACGa -3'
miRNA:   3'- uagGCUa--GGGUCCGcGgCUGCCUGUc -5'
5925 5' -60.4 NC_001806.1 + 74068 0.67 0.675243
Target:  5'- gGUgCGGaCCCAGGC-CCGuCGGGCGa -3'
miRNA:   3'- -UAgGCUaGGGUCCGcGGCuGCCUGUc -5'
5925 5' -60.4 NC_001806.1 + 46102 0.67 0.665352
Target:  5'- uGUCCGG-CCCGGG-GCCugcGCGGGCGc -3'
miRNA:   3'- -UAGGCUaGGGUCCgCGGc--UGCCUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.