miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5926 3' -53.8 NC_001806.1 + 86172 0.66 0.966892
Target:  5'- cGGGACCUGcgcgCGGCGGgccaugagcuuguaaUacaccGUCAGguGGGCCa -3'
miRNA:   3'- -CUUUGGACa---GCCGCU---------------A-----UAGUC--CCCGG- -5'
5926 3' -53.8 NC_001806.1 + 151544 0.66 0.965602
Target:  5'- uGGGCCcGggCGGcCGGgggcggCGGGGGCCg -3'
miRNA:   3'- cUUUGGaCa-GCC-GCUaua---GUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 33980 0.66 0.962222
Target:  5'- cGGGCCggggGUCGcCGGgg-CAGGGGCg -3'
miRNA:   3'- cUUUGGa---CAGCcGCUauaGUCCCCGg -5'
5926 3' -53.8 NC_001806.1 + 67405 0.66 0.958618
Target:  5'- aGGGCCUGuUCGGUaucgucGUUGGGGGUCa -3'
miRNA:   3'- cUUUGGAC-AGCCGcua---UAGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 27033 0.66 0.958618
Target:  5'- gGAGGCCga--GGCGGUcAUCGggccgugccuGGGGCCc -3'
miRNA:   3'- -CUUUGGacagCCGCUA-UAGU----------CCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 101301 0.66 0.958618
Target:  5'- ---cCCUGUCGGg-----CAGGGGCUc -3'
miRNA:   3'- cuuuGGACAGCCgcuauaGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 45309 0.66 0.956346
Target:  5'- gGGAGCCgccCGGCGAggagGgcgggcgcgaugggaUCGGGGGCg -3'
miRNA:   3'- -CUUUGGacaGCCGCUa---U---------------AGUCCCCGg -5'
5926 3' -53.8 NC_001806.1 + 50497 0.66 0.954786
Target:  5'- gGAAGCCcc---GCGGUcgUGGGGGCCg -3'
miRNA:   3'- -CUUUGGacagcCGCUAuaGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 151065 0.66 0.954786
Target:  5'- --cACCcGcgCGGgGGUcgCGGGGGUCg -3'
miRNA:   3'- cuuUGGaCa-GCCgCUAuaGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 33805 0.66 0.950719
Target:  5'- -uAGCCgGcCGGCGGguggacUCgcgGGGGGCCg -3'
miRNA:   3'- cuUUGGaCaGCCGCUau----AG---UCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 114562 0.66 0.9503
Target:  5'- -cGACCUGUcgCGGCaGGUcccccugGUCcccccggcucuGGGGGCCa -3'
miRNA:   3'- cuUUGGACA--GCCG-CUA-------UAG-----------UCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 100387 0.67 0.946416
Target:  5'- --cGCCgggCGGCG----CGGGGGCCg -3'
miRNA:   3'- cuuUGGacaGCCGCuauaGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 64946 0.67 0.946416
Target:  5'- aGGGACCaccggcGUCGGCGcccgggcCGGGGGUCc -3'
miRNA:   3'- -CUUUGGa-----CAGCCGCuaua---GUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 9379 0.67 0.946416
Target:  5'- gGAGGCCUGggaguaaCGGCGAUc----GGGCCu -3'
miRNA:   3'- -CUUUGGACa------GCCGCUAuagucCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 95419 0.67 0.945527
Target:  5'- aAGACC-GUCGccGCGGgcccggggggCAGGGGCCc -3'
miRNA:   3'- cUUUGGaCAGC--CGCUaua-------GUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 2512 0.67 0.941873
Target:  5'- -cGGCCUGggCGGCGGg---GGcGGGCCc -3'
miRNA:   3'- cuUUGGACa-GCCGCUauagUC-CCCGG- -5'
5926 3' -53.8 NC_001806.1 + 99433 0.67 0.941873
Target:  5'- aAGACCgg--GGCGA-AUCAGcGGGCCc -3'
miRNA:   3'- cUUUGGacagCCGCUaUAGUC-CCCGG- -5'
5926 3' -53.8 NC_001806.1 + 72521 0.67 0.93903
Target:  5'- gGGAGCCcugcGUCGGCGugggCccccgggaggggguaGGGGGCCc -3'
miRNA:   3'- -CUUUGGa---CAGCCGCuauaG---------------UCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 10487 0.67 0.937086
Target:  5'- -cGGCUgggGUCGGgGGUgggGUCGgaacuGGGGCCg -3'
miRNA:   3'- cuUUGGa--CAGCCgCUA---UAGU-----CCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 119496 0.67 0.937086
Target:  5'- -cGGCCUGU-GGCGuugcAUCGGGGcuacGCCa -3'
miRNA:   3'- cuUUGGACAgCCGCua--UAGUCCC----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.