miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5927 3' -62.7 NC_001806.1 + 143251 0.66 0.640489
Target:  5'- cGGGuuGgggggggaUGUGGGCgGGGGUGcGCg -3'
miRNA:   3'- aCCCggCagc-----ACGCCCGgUCCUAC-CG- -5'
5927 3' -62.7 NC_001806.1 + 126122 0.66 0.640489
Target:  5'- gUGGGCCGcgCGgacgacgGC-GGCgAGGccGGCg -3'
miRNA:   3'- -ACCCGGCa-GCa------CGcCCGgUCCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 41742 0.66 0.640489
Target:  5'- cGGGCCaccCGcGgGGGaCCAGGAgcuuuucGGCg -3'
miRNA:   3'- aCCCGGca-GCaCgCCC-GGUCCUa------CCG- -5'
5927 3' -62.7 NC_001806.1 + 10375 0.66 0.630704
Target:  5'- cUGGGCCaagaccUCGgGgGGGCgGGGGgaGGCg -3'
miRNA:   3'- -ACCCGGc-----AGCaCgCCCGgUCCUa-CCG- -5'
5927 3' -62.7 NC_001806.1 + 96428 0.66 0.630704
Target:  5'- gGGGuuGaCGcUGgGGGUCcuGGUGGCg -3'
miRNA:   3'- aCCCggCaGC-ACgCCCGGucCUACCG- -5'
5927 3' -62.7 NC_001806.1 + 29112 0.66 0.630704
Target:  5'- gGGGCCG-Ca---GGGCguGGAUGGg -3'
miRNA:   3'- aCCCGGCaGcacgCCCGguCCUACCg -5'
5927 3' -62.7 NC_001806.1 + 30420 0.66 0.630704
Target:  5'- gGGGCCGggCGUggaggGUGGGCaCGGGcccucccgcGGCg -3'
miRNA:   3'- aCCCGGCa-GCA-----CGCCCG-GUCCua-------CCG- -5'
5927 3' -62.7 NC_001806.1 + 54779 0.66 0.630704
Target:  5'- -uGGCCG-CGgcaGCaccaGGGCCAGcccGGUGGCa -3'
miRNA:   3'- acCCGGCaGCa--CG----CCCGGUC---CUACCG- -5'
5927 3' -62.7 NC_001806.1 + 11755 0.66 0.620921
Target:  5'- aGGGCgugGUCGaUGCuuggGGaGCgGGGAUGGUg -3'
miRNA:   3'- aCCCGg--CAGC-ACG----CC-CGgUCCUACCG- -5'
5927 3' -62.7 NC_001806.1 + 20187 0.66 0.620921
Target:  5'- gGGGCCGgc--GCGGaGUCGGGcacGGCg -3'
miRNA:   3'- aCCCGGCagcaCGCC-CGGUCCua-CCG- -5'
5927 3' -62.7 NC_001806.1 + 111197 0.66 0.620921
Target:  5'- cGGGCCcUgGggauagccUGCGcGGCCGGGGccucgaugugggUGGCg -3'
miRNA:   3'- aCCCGGcAgC--------ACGC-CCGGUCCU------------ACCG- -5'
5927 3' -62.7 NC_001806.1 + 76242 0.66 0.620921
Target:  5'- cGGGCCGaCGcGCGGcGCgCGaucGGAagcgUGGCg -3'
miRNA:   3'- aCCCGGCaGCaCGCC-CG-GU---CCU----ACCG- -5'
5927 3' -62.7 NC_001806.1 + 44452 0.66 0.611145
Target:  5'- cGGGCCcggCGUccgcGUGGaGCaugcggaGGGAUGGCu -3'
miRNA:   3'- aCCCGGca-GCA----CGCC-CGg------UCCUACCG- -5'
5927 3' -62.7 NC_001806.1 + 66231 0.66 0.611145
Target:  5'- gGGGCggagCGUUGUGUGGGCgGGGcguuuGCu -3'
miRNA:   3'- aCCCG----GCAGCACGCCCGgUCCuac--CG- -5'
5927 3' -62.7 NC_001806.1 + 21897 0.66 0.611145
Target:  5'- cGGGCCGcaUCGaGCGccGCCGGGcccgcgcggcgGUGGCc -3'
miRNA:   3'- aCCCGGC--AGCaCGCc-CGGUCC-----------UACCG- -5'
5927 3' -62.7 NC_001806.1 + 61592 0.66 0.611145
Target:  5'- cGaGGCCGUCGUGUGcacGGCCucGucccGGCu -3'
miRNA:   3'- aC-CCGGCAGCACGC---CCGGucCua--CCG- -5'
5927 3' -62.7 NC_001806.1 + 93203 0.66 0.611145
Target:  5'- cGGGCCGgguuugUGUGCGcGGCCucaagccucGgcGGCg -3'
miRNA:   3'- aCCCGGCa-----GCACGC-CCGGuc-------CuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 91148 0.66 0.591643
Target:  5'- cGuGGCCGcUGUucgaGGGCCAGGAcacGGCc -3'
miRNA:   3'- aC-CCGGCaGCAcg--CCCGGUCCUa--CCG- -5'
5927 3' -62.7 NC_001806.1 + 3291 0.66 0.591643
Target:  5'- gGGGCgCGUCGgcgugcgGCGgcGGCgGGGAagcggGGCc -3'
miRNA:   3'- aCCCG-GCAGCa------CGC--CCGgUCCUa----CCG- -5'
5927 3' -62.7 NC_001806.1 + 42005 0.66 0.591643
Target:  5'- aGGGCUGcucCGUGCuGGCCGcGGGguuggGGUc -3'
miRNA:   3'- aCCCGGCa--GCACGcCCGGU-CCUa----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.