miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5933 5' -58.5 NC_001806.1 + 89565 0.66 0.819299
Target:  5'- aUUCGCGuCgGCccgGCCgGCCGGGCUu -3'
miRNA:   3'- aGAGCGCuG-CGuuaCGG-UGGCCCGAc -5'
5933 5' -58.5 NC_001806.1 + 120080 0.66 0.819299
Target:  5'- --cCGCG-CGCAuacaucuggcGUGCCuCCGGGCc- -3'
miRNA:   3'- agaGCGCuGCGU----------UACGGuGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 33333 0.66 0.819299
Target:  5'- -gUCGcCGACGCcccuugGCCGCCccGGCUGc -3'
miRNA:   3'- agAGC-GCUGCGuua---CGGUGGc-CCGAC- -5'
5933 5' -58.5 NC_001806.1 + 1936 0.66 0.819299
Target:  5'- --gUGCGGCGCAGgucccgcGCCGCCGGccaGCg- -3'
miRNA:   3'- agaGCGCUGCGUUa------CGGUGGCC---CGac -5'
5933 5' -58.5 NC_001806.1 + 51117 0.66 0.81845
Target:  5'- --cUGCgGGCGCAcGUGUCggggaggcgcgcgACCGGGCUGg -3'
miRNA:   3'- agaGCG-CUGCGU-UACGG-------------UGGCCCGAC- -5'
5933 5' -58.5 NC_001806.1 + 38263 0.66 0.802026
Target:  5'- uUCUgGacgaGACGgGcgGaCCGCCGGGCg- -3'
miRNA:   3'- -AGAgCg---CUGCgUuaC-GGUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 21754 0.66 0.802026
Target:  5'- --aCGCGAgGCGcggGCCGUCGGGCg- -3'
miRNA:   3'- agaGCGCUgCGUua-CGGUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 71887 0.66 0.802026
Target:  5'- cCUCGCGACGUccUGuCCGCgGaGGCc- -3'
miRNA:   3'- aGAGCGCUGCGuuAC-GGUGgC-CCGac -5'
5933 5' -58.5 NC_001806.1 + 94491 0.66 0.802026
Target:  5'- cUCgCGCGGCGCca--CCGCCGcGCUGg -3'
miRNA:   3'- -AGaGCGCUGCGuuacGGUGGCcCGAC- -5'
5933 5' -58.5 NC_001806.1 + 37689 0.66 0.793162
Target:  5'- cUCUCGCuGAUGCGGUcGaCCGCCGcGCg- -3'
miRNA:   3'- -AGAGCG-CUGCGUUA-C-GGUGGCcCGac -5'
5933 5' -58.5 NC_001806.1 + 35149 0.66 0.787775
Target:  5'- ---gGCGACGC-AUGCCagcccaacaaaauccGCCGGGgUGc -3'
miRNA:   3'- agagCGCUGCGuUACGG---------------UGGCCCgAC- -5'
5933 5' -58.5 NC_001806.1 + 30402 0.66 0.783249
Target:  5'- ---gGUGGCGCGcgGCUcggggggGCCGGGCg- -3'
miRNA:   3'- agagCGCUGCGUuaCGG-------UGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 4934 0.67 0.775019
Target:  5'- cCUCGcCGGCGuCGGUGCCcGCCgcggGGGCc- -3'
miRNA:   3'- aGAGC-GCUGC-GUUACGG-UGG----CCCGac -5'
5933 5' -58.5 NC_001806.1 + 57011 0.67 0.756379
Target:  5'- ---gGCGGCGCccAGUGCCaggcacugggugGCCGGGCc- -3'
miRNA:   3'- agagCGCUGCG--UUACGG------------UGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 55703 0.67 0.746895
Target:  5'- -gUCGaUGugGgGGUGaCCuCCGGGCUGg -3'
miRNA:   3'- agAGC-GCugCgUUAC-GGuGGCCCGAC- -5'
5933 5' -58.5 NC_001806.1 + 4058 0.67 0.737313
Target:  5'- gCUCG-GGCGCccacAcgGCCGCCgGGGCg- -3'
miRNA:   3'- aGAGCgCUGCG----UuaCGGUGG-CCCGac -5'
5933 5' -58.5 NC_001806.1 + 34545 0.67 0.737313
Target:  5'- gCUCGUaaGAgcCGCGAcccgGCCGCCGGGgaGc -3'
miRNA:   3'- aGAGCG--CU--GCGUUa---CGGUGGCCCgaC- -5'
5933 5' -58.5 NC_001806.1 + 61428 0.67 0.737313
Target:  5'- uUUUCGaUGGcCGcCAGcGCCGCCGGGCUc -3'
miRNA:   3'- -AGAGC-GCU-GC-GUUaCGGUGGCCCGAc -5'
5933 5' -58.5 NC_001806.1 + 75482 0.67 0.737313
Target:  5'- --cCGCGACGCGcgcGaCCACCGGcGCg- -3'
miRNA:   3'- agaGCGCUGCGUua-C-GGUGGCC-CGac -5'
5933 5' -58.5 NC_001806.1 + 1542 0.67 0.727643
Target:  5'- cCUcCGCGGCcCGc-GCCACCGGGCc- -3'
miRNA:   3'- aGA-GCGCUGcGUuaCGGUGGCCCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.