miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 52831 0.66 0.52168
Target:  5'- -uGCCCCCgcgccucccgGCCCGuaacgucgcGGGACCCgacaggcgacCGCCGGc -3'
miRNA:   3'- guCGGGGG----------UGGGU---------CCCUGGG----------GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 17149 0.66 0.52168
Target:  5'- -cGCCUCCGCugccggucgcuCCAaGGGCCCCcCCGGg -3'
miRNA:   3'- guCGGGGGUG-----------GGUcCCUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 146568 0.66 0.52168
Target:  5'- gCGGCCagagaCCACCCAGcgcccGACCCCcCCc- -3'
miRNA:   3'- -GUCGGg----GGUGGGUCc----CUGGGGuGGcu -5'
5934 3' -65.3 NC_001806.1 + 123807 0.66 0.52168
Target:  5'- -cGCUCCU-CCCAcGGGucCCgCCACCGAu -3'
miRNA:   3'- guCGGGGGuGGGU-CCCu-GG-GGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 109508 0.66 0.52168
Target:  5'- aGGCCgCUCA-CCAGGGcCUCCAgCGAg -3'
miRNA:   3'- gUCGG-GGGUgGGUCCCuGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 61525 0.66 0.52168
Target:  5'- aCAGCCCgUACacgcggucgggCGGGGGCuuggcgugCCCGCCGAg -3'
miRNA:   3'- -GUCGGGgGUGg----------GUCCCUG--------GGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 56045 0.66 0.52168
Target:  5'- -uGUCCCCuuCCGGaauuuauacccGGGCCCCAuCCGGg -3'
miRNA:   3'- guCGGGGGugGGUC-----------CCUGGGGU-GGCU- -5'
5934 3' -65.3 NC_001806.1 + 71995 0.66 0.518913
Target:  5'- gAGCUCCCcaacuuccucgaguACCCAGGGGCgCgCGgCGGa -3'
miRNA:   3'- gUCGGGGG--------------UGGGUCCCUG-GgGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 3407 0.66 0.51248
Target:  5'- aAGCCCUCGgCCAGcgccuccaGGAUCCCGCgGc -3'
miRNA:   3'- gUCGGGGGUgGGUC--------CCUGGGGUGgCu -5'
5934 3' -65.3 NC_001806.1 + 67147 0.66 0.51248
Target:  5'- -cGCCCCgAcCCCAGGGcggucGCCuCCAUCa- -3'
miRNA:   3'- guCGGGGgU-GGGUCCC-----UGG-GGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 104519 0.66 0.51248
Target:  5'- aCGGUCCCCACgggaUGGGGAaaaCCaCCACCa- -3'
miRNA:   3'- -GUCGGGGGUGg---GUCCCU---GG-GGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 22069 0.66 0.506992
Target:  5'- gGGCCCCCGCCCccgGGGcgggugcuguacggcGGCCUgGgCGAc -3'
miRNA:   3'- gUCGGGGGUGGG---UCC---------------CUGGGgUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 2104 0.66 0.503347
Target:  5'- gCAGCCCCagaaACuCCAcGG-CCCCGgCGAa -3'
miRNA:   3'- -GUCGGGGg---UG-GGUcCCuGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 4274 0.66 0.503347
Target:  5'- cCAGCUcgaCCCGCCgGGGcuGCCCgGCCGu -3'
miRNA:   3'- -GUCGG---GGGUGGgUCCc-UGGGgUGGCu -5'
5934 3' -65.3 NC_001806.1 + 23514 0.66 0.503347
Target:  5'- -cGCCggCCCGCCgAGGG-CCCCgACCc- -3'
miRNA:   3'- guCGG--GGGUGGgUCCCuGGGG-UGGcu -5'
5934 3' -65.3 NC_001806.1 + 28127 0.66 0.503347
Target:  5'- gAGCCCCgC-CCCGGaGcGAguaCCCGCCGGc -3'
miRNA:   3'- gUCGGGG-GuGGGUC-C-CUg--GGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 71251 0.66 0.503347
Target:  5'- uUAGCCggaCCGgagucuCCCAGGGACCUggagguccgcgaCGCCGGa -3'
miRNA:   3'- -GUCGGg--GGU------GGGUCCCUGGG------------GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 72930 0.66 0.494286
Target:  5'- -cGCCgCCgACCCAccuGGACUCCGCCu- -3'
miRNA:   3'- guCGG-GGgUGGGUc--CCUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 69229 0.66 0.494286
Target:  5'- cCAGCCUgCugcaGCUCGGGGAgcagccCUCCGCCGGc -3'
miRNA:   3'- -GUCGGGgG----UGGGUCCCU------GGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 47194 0.66 0.494286
Target:  5'- -cGCCCCCccGCCCggccGGGGgucccaaaaacACCCCGgCGGc -3'
miRNA:   3'- guCGGGGG--UGGG----UCCC-----------UGGGGUgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.