miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5935 3' -60 NC_001806.1 + 9727 0.66 0.73032
Target:  5'- cAGGGCGGCCCCcaucACCGccCCUa--- -3'
miRNA:   3'- -UCCCGCCGGGGcu--UGGUucGGAacua -5'
5935 3' -60 NC_001806.1 + 4080 0.66 0.724475
Target:  5'- cGGGGCgcccgaGGCCUCGAACCGGcgucgcgccuccuccGCCUcGGg -3'
miRNA:   3'- -UCCCG------CCGGGGCUUGGUU---------------CGGAaCUa -5'
5935 3' -60 NC_001806.1 + 33145 0.66 0.720563
Target:  5'- gGGGGCcccucGUCCCGGGCCGuacgcGGCCUUc-- -3'
miRNA:   3'- -UCCCGc----CGGGGCUUGGU-----UCGGAAcua -5'
5935 3' -60 NC_001806.1 + 2525 0.66 0.720563
Target:  5'- gGGGGCGGgCCCGGcgcACCGcgcggcgaucgaGGCCa---- -3'
miRNA:   3'- -UCCCGCCgGGGCU---UGGU------------UCGGaacua -5'
5935 3' -60 NC_001806.1 + 150611 0.66 0.719583
Target:  5'- uGGGCGGUaacuCCCGcccaaugGGCCGGGCCccGAa -3'
miRNA:   3'- uCCCGCCG----GGGC-------UUGGUUCGGaaCUa -5'
5935 3' -60 NC_001806.1 + 3801 0.66 0.710732
Target:  5'- -cGGCGGCCgCCGcgugcGCCAGGCCc---- -3'
miRNA:   3'- ucCCGCCGG-GGCu----UGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 77854 0.66 0.700836
Target:  5'- uGGGgGGCCUCGAuggaugcggcgGCCGAGCuCUa--- -3'
miRNA:   3'- uCCCgCCGGGGCU-----------UGGUUCG-GAacua -5'
5935 3' -60 NC_001806.1 + 3360 0.66 0.690883
Target:  5'- cGGGCcgGGCCCCG-GCC-AGCCccggGAc -3'
miRNA:   3'- uCCCG--CCGGGGCuUGGuUCGGaa--CUa -5'
5935 3' -60 NC_001806.1 + 77963 0.66 0.690883
Target:  5'- -cGGCGGCCCCGgGGCCGccGCUcgGAc -3'
miRNA:   3'- ucCCGCCGGGGC-UUGGUu-CGGaaCUa -5'
5935 3' -60 NC_001806.1 + 148096 0.66 0.690883
Target:  5'- gAGGGgGGCgcugUCCGAGCCGcGGCCggcUGGg -3'
miRNA:   3'- -UCCCgCCG----GGGCUUGGU-UCGGa--ACUa -5'
5935 3' -60 NC_001806.1 + 151458 0.66 0.690883
Target:  5'- cGGGGCGGCCgCGGGCgCGcuCCU-GAc -3'
miRNA:   3'- -UCCCGCCGGgGCUUG-GUucGGAaCUa -5'
5935 3' -60 NC_001806.1 + 47254 0.66 0.680883
Target:  5'- cGGGGCG--CCUGAGCCAGGCCc---- -3'
miRNA:   3'- -UCCCGCcgGGGCUUGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 103618 0.66 0.680883
Target:  5'- cGGaGGCGGCUCgGggUUuGGUCUUGGUg -3'
miRNA:   3'- -UC-CCGCCGGGgCuuGGuUCGGAACUA- -5'
5935 3' -60 NC_001806.1 + 27776 0.66 0.680883
Target:  5'- cGGGUugGGCCCCcaaaucggGGGCCGGGCCg---- -3'
miRNA:   3'- uCCCG--CCGGGG--------CUUGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 126894 0.67 0.674864
Target:  5'- cGGGGCcgcaggacccagcaaGGCguccauucuCCCGAACCAGGCCg---- -3'
miRNA:   3'- -UCCCG---------------CCG---------GGGCUUGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 68253 0.67 0.667826
Target:  5'- cGGGGCGGacgaCCCGGcguuucuggccacgGCCAAGCUg---- -3'
miRNA:   3'- -UCCCGCCg---GGGCU--------------UGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 18793 0.67 0.660773
Target:  5'- -cGGUGGCgUCGAAUCGAGCCUccaccucccguaUGGUg -3'
miRNA:   3'- ucCCGCCGgGGCUUGGUUCGGA------------ACUA- -5'
5935 3' -60 NC_001806.1 + 131497 0.67 0.660773
Target:  5'- aGGGGCcaaguuGGcCCCCGGACCcGGGCCg---- -3'
miRNA:   3'- -UCCCG------CC-GGGGCUUGG-UUCGGaacua -5'
5935 3' -60 NC_001806.1 + 113090 0.67 0.650681
Target:  5'- cGuGGCGGCCCCGGccgGCCccGCCgcaGAc -3'
miRNA:   3'- uC-CCGCCGGGGCU---UGGuuCGGaa-CUa -5'
5935 3' -60 NC_001806.1 + 29938 0.67 0.640574
Target:  5'- cGGGGCGGCuCCCGccaguCgCGAGCCg---- -3'
miRNA:   3'- -UCCCGCCG-GGGCuu---G-GUUCGGaacua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.