miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5935 5' -64.9 NC_001806.1 + 55518 0.66 0.535697
Target:  5'- aCCAcaCGGGCCCGGggGguuuaguGGGGCGGcCc -3'
miRNA:   3'- -GGUagGCCCGGGUCgaC-------CCCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 30255 0.66 0.531036
Target:  5'- gCCGccUCCGGGgcccggcccccgcgcCCCGGCccccGGGGCGGa- -3'
miRNA:   3'- -GGU--AGGCCC---------------GGGUCGac--CCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 150974 0.66 0.527318
Target:  5'- cCCGcUCgCGGGCCCAcgagccgcggcGCgccaGGcGGGCGGcCg -3'
miRNA:   3'- -GGU-AG-GCCCGGGU-----------CGa---CC-CCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 38486 0.66 0.527318
Target:  5'- gCCAUgaCCGGGCUguCGGCUGccgucGGGGCuGGg- -3'
miRNA:   3'- -GGUA--GGCCCGG--GUCGAC-----CCCCG-CCag -5'
5935 5' -64.9 NC_001806.1 + 82725 0.66 0.518067
Target:  5'- -uGUCCGGGgUCuGCgGGGcGGCGG-Cg -3'
miRNA:   3'- ggUAGGCCCgGGuCGaCCC-CCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 21912 0.66 0.518067
Target:  5'- gCCG-CCGGGCCCGcGC-GGcGGUGGcCg -3'
miRNA:   3'- -GGUaGGCCCGGGU-CGaCCcCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 27321 0.66 0.518067
Target:  5'- gCCGagucuUCgGGGCCCGGCccauuGGGCGGg- -3'
miRNA:   3'- -GGU-----AGgCCCGGGUCGacc--CCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 94520 0.66 0.518067
Target:  5'- gCGUUCGGGaguuuauGgUGGGGGCGGUg -3'
miRNA:   3'- gGUAGGCCCgggu---CgACCCCCGCCAg -5'
5935 5' -64.9 NC_001806.1 + 95422 0.66 0.518067
Target:  5'- aCCGUCgccgCGGGCCCg---GGGGGCaGGg- -3'
miRNA:   3'- -GGUAG----GCCCGGGucgaCCCCCG-CCag -5'
5935 5' -64.9 NC_001806.1 + 44728 0.66 0.518067
Target:  5'- gUAUCCcGGcCCCGGUUGGaGGGgGGg- -3'
miRNA:   3'- gGUAGGcCC-GGGUCGACC-CCCgCCag -5'
5935 5' -64.9 NC_001806.1 + 24507 0.66 0.517145
Target:  5'- aCCG-CCGGGCCguGCUgccggcgcuggacGGccGGGCGG-Cg -3'
miRNA:   3'- -GGUaGGCCCGGguCGA-------------CC--CCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 23519 0.66 0.507965
Target:  5'- gCCcgCCgaGGGCCCcgacccccugggcGGCUGGcGGCGG-Ca -3'
miRNA:   3'- -GGuaGG--CCCGGG-------------UCGACCcCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 119263 0.67 0.481752
Target:  5'- gCGUCCGcagcccuuGGCCCGGCcccacgcGGGGGCGc-- -3'
miRNA:   3'- gGUAGGC--------CCGGGUCGa------CCCCCGCcag -5'
5935 5' -64.9 NC_001806.1 + 55289 0.67 0.472865
Target:  5'- aCGUggGGGUCCguuaGGUUGGGGGCGcuGUCg -3'
miRNA:   3'- gGUAggCCCGGG----UCGACCCCCGC--CAG- -5'
5935 5' -64.9 NC_001806.1 + 56714 0.67 0.472865
Target:  5'- gUCGcUCUGGGUCCuccgGGGGGCGG-Cg -3'
miRNA:   3'- -GGU-AGGCCCGGGucgaCCCCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 1503 0.67 0.472865
Target:  5'- gUCGUCguCGGGCuCCAGCaGGGcGCGGg- -3'
miRNA:   3'- -GGUAG--GCCCG-GGUCGaCCCcCGCCag -5'
5935 5' -64.9 NC_001806.1 + 62314 0.67 0.464061
Target:  5'- ----gCGGGCCUGGCgcggaGGGGGUuugucGGUCa -3'
miRNA:   3'- gguagGCCCGGGUCGa----CCCCCG-----CCAG- -5'
5935 5' -64.9 NC_001806.1 + 74866 0.67 0.464061
Target:  5'- gCCGUCCuggcgacccugcGGGCCUcccuGCcGGcGGGCuGGUCg -3'
miRNA:   3'- -GGUAGG------------CCCGGGu---CGaCC-CCCG-CCAG- -5'
5935 5' -64.9 NC_001806.1 + 24875 0.67 0.463186
Target:  5'- gCggCgGGGgCCGuggagguGCUGGGGGCGGa- -3'
miRNA:   3'- gGuaGgCCCgGGU-------CGACCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 50092 0.67 0.461437
Target:  5'- cCCGUCgGGGCCgCGGCcgUGccguuacugagcgcGGGGgGGUUa -3'
miRNA:   3'- -GGUAGgCCCGG-GUCG--AC--------------CCCCgCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.