miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 3' -60.3 NC_001806.1 + 10401 0.66 0.735448
Target:  5'- -gGGaGGCgGGAgccGGGGGGuccCGCUGg -3'
miRNA:   3'- agCC-CCGgCCUaa-CCCCCCu--GUGAUu -5'
5937 3' -60.3 NC_001806.1 + 11423 0.66 0.735448
Target:  5'- cCGGcGCCGGGauUUGGGGGGGg----- -3'
miRNA:   3'- aGCCcCGGCCU--AACCCCCCUgugauu -5'
5937 3' -60.3 NC_001806.1 + 44733 0.66 0.725829
Target:  5'- cCGGccccGGuuGGAg-GGGGGGGCGCc-- -3'
miRNA:   3'- aGCC----CCggCCUaaCCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 103434 0.66 0.725829
Target:  5'- -gGGGGUgGGAUga-GGGGGCGCg-- -3'
miRNA:   3'- agCCCCGgCCUAaccCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 147370 0.66 0.716132
Target:  5'- cUUGGccccuGCCGGcgcgagGGGGGGACGCg-- -3'
miRNA:   3'- -AGCCc----CGGCCuaa---CCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 10697 0.66 0.716132
Target:  5'- aUGGGGCCGG---GGGGGcGuACGCc-- -3'
miRNA:   3'- aGCCCCGGCCuaaCCCCC-C-UGUGauu -5'
5937 3' -60.3 NC_001806.1 + 147784 0.66 0.706367
Target:  5'- -gGGGGcCCGGGgcGGGGGGcggaGC-CUGg -3'
miRNA:   3'- agCCCC-GGCCUaaCCCCCC----UGuGAUu -5'
5937 3' -60.3 NC_001806.1 + 10490 0.66 0.706367
Target:  5'- cUGGGGUCGGGggUGGGGucGGA-ACUGGg -3'
miRNA:   3'- aGCCCCGGCCUa-ACCCC--CCUgUGAUU- -5'
5937 3' -60.3 NC_001806.1 + 147497 0.66 0.696541
Target:  5'- gCGGcGCCGGA--GGGGGcGGCGCc-- -3'
miRNA:   3'- aGCCcCGGCCUaaCCCCC-CUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 55075 0.66 0.686664
Target:  5'- gUGGGGCUGGAggGucagagacGGGGGGCGg--- -3'
miRNA:   3'- aGCCCCGGCCUaaC--------CCCCCUGUgauu -5'
5937 3' -60.3 NC_001806.1 + 93706 0.66 0.686664
Target:  5'- -aGGGGuuGGGgggUGGGGGaAC-CUAGg -3'
miRNA:   3'- agCCCCggCCUa--ACCCCCcUGuGAUU- -5'
5937 3' -60.3 NC_001806.1 + 77934 0.66 0.686664
Target:  5'- cUGGGcccaGCUGGAaugGGGGGGugACg-- -3'
miRNA:   3'- aGCCC----CGGCCUaa-CCCCCCugUGauu -5'
5937 3' -60.3 NC_001806.1 + 71079 0.67 0.666788
Target:  5'- -aGGGGCC----UGGGGGGACuACa-- -3'
miRNA:   3'- agCCCCGGccuaACCCCCCUG-UGauu -5'
5937 3' -60.3 NC_001806.1 + 149045 0.67 0.646805
Target:  5'- -gGGGGgCGGGUaagaaUGGGGGGGgAUUu- -3'
miRNA:   3'- agCCCCgGCCUA-----ACCCCCCUgUGAuu -5'
5937 3' -60.3 NC_001806.1 + 66227 0.67 0.646805
Target:  5'- gUUGGGGgCGGAgcguugugUGGGcGGGGCguuuGCUAc -3'
miRNA:   3'- -AGCCCCgGCCUa-------ACCC-CCCUG----UGAUu -5'
5937 3' -60.3 NC_001806.1 + 19100 0.67 0.646805
Target:  5'- cUUGGGGCCgacGGggUGGGGGcccGGgGCUGc -3'
miRNA:   3'- -AGCCCCGG---CCuaACCCCC---CUgUGAUu -5'
5937 3' -60.3 NC_001806.1 + 23944 0.67 0.646805
Target:  5'- gCGGGGCC----UGGGGGGGC-Cg-- -3'
miRNA:   3'- aGCCCCGGccuaACCCCCCUGuGauu -5'
5937 3' -60.3 NC_001806.1 + 143805 0.67 0.636792
Target:  5'- -aGGGGaCGGAggGaGGGGGugACg-- -3'
miRNA:   3'- agCCCCgGCCUaaC-CCCCCugUGauu -5'
5937 3' -60.3 NC_001806.1 + 109232 0.67 0.626777
Target:  5'- gUGGGGCCGGGc-GGGGcGGAaucCUGGg -3'
miRNA:   3'- aGCCCCGGCCUaaCCCC-CCUgu-GAUU- -5'
5937 3' -60.3 NC_001806.1 + 30797 0.67 0.626777
Target:  5'- gCGGGGCCGucGGUgcccUGGGaGGGAgACa-- -3'
miRNA:   3'- aGCCCCGGC--CUA----ACCC-CCCUgUGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.