miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 5' -59.5 NC_001806.1 + 75986 0.66 0.802365
Target:  5'- -------cGCGGCcuucGgGGCCGCGGCCg -3'
miRNA:   3'- cgagucauUGCCG----UgCCGGCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 26490 0.66 0.802365
Target:  5'- cGgUCAGgaGCGcGCccGCGGCCGCcccGCCg -3'
miRNA:   3'- -CgAGUCauUGC-CG--UGCCGGCGc--CGGg -5'
5937 5' -59.5 NC_001806.1 + 5506 0.66 0.802365
Target:  5'- ---gAGcAGCGGa--GGCCGcCGGCCCc -3'
miRNA:   3'- cgagUCaUUGCCgugCCGGC-GCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 104030 0.66 0.802365
Target:  5'- aGCuUCAGggAGUGGCGCaGCUGCuucauccccguGGCCCg -3'
miRNA:   3'- -CG-AGUCa-UUGCCGUGcCGGCG-----------CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 93483 0.66 0.802365
Target:  5'- ---aGGUGGC-GCACgaGGCCGaGGCCCu -3'
miRNA:   3'- cgagUCAUUGcCGUG--CCGGCgCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 86392 0.66 0.802365
Target:  5'- cGCUCGGcUAACGcgGCGGCCGC--UCCg -3'
miRNA:   3'- -CGAGUC-AUUGCcgUGCCGGCGccGGG- -5'
5937 5' -59.5 NC_001806.1 + 2432 0.66 0.801499
Target:  5'- gGCgcgCAGgg--GGCcaaagagGCGGCCcccgGCGGCCCc -3'
miRNA:   3'- -CGa--GUCauugCCG-------UGCCGG----CGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 37305 0.66 0.797151
Target:  5'- gGCcgCAGgcGCGuggcgagguuauccaGCACaGCCGCGGUCg -3'
miRNA:   3'- -CGa-GUCauUGC---------------CGUGcCGGCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 110071 0.66 0.793647
Target:  5'- aGCUCcaucgcgGGCGGCgacguaacACGGCCcagaGGCCCc -3'
miRNA:   3'- -CGAGuca----UUGCCG--------UGCCGGcg--CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 44787 0.66 0.793647
Target:  5'- gGCUCGGUGAgGGCcgggGgGGUCGCcaggauGUCCa -3'
miRNA:   3'- -CGAGUCAUUgCCG----UgCCGGCGc-----CGGG- -5'
5937 5' -59.5 NC_001806.1 + 81988 0.66 0.793647
Target:  5'- uGCUCG---GCGGCGCGGCacaGGaUCCg -3'
miRNA:   3'- -CGAGUcauUGCCGUGCCGgcgCC-GGG- -5'
5937 5' -59.5 NC_001806.1 + 93928 0.66 0.793647
Target:  5'- gGCUCAGccaGACGccggguagcGUACGGaCCGCcucGGUCCa -3'
miRNA:   3'- -CGAGUCa--UUGC---------CGUGCC-GGCG---CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 99574 0.66 0.793647
Target:  5'- --cCGGUGGCGGCGgGGgggaaCGCgGGCuCCg -3'
miRNA:   3'- cgaGUCAUUGCCGUgCCg----GCG-CCG-GG- -5'
5937 5' -59.5 NC_001806.1 + 3066 0.66 0.793647
Target:  5'- gGCUCuGGUugucaaacAGCaGGUccgcgGCGGCgGCGGCCg -3'
miRNA:   3'- -CGAG-UCA--------UUG-CCG-----UGCCGgCGCCGGg -5'
5937 5' -59.5 NC_001806.1 + 95292 0.66 0.793647
Target:  5'- cGCaUgGGggcgGGgGGCGCGGCgGaCGcGCCCa -3'
miRNA:   3'- -CG-AgUCa---UUgCCGUGCCGgC-GC-CGGG- -5'
5937 5' -59.5 NC_001806.1 + 58327 0.66 0.784793
Target:  5'- ----cGUcuUGGCguugGCGGCCGCcuGGCCCg -3'
miRNA:   3'- cgaguCAuuGCCG----UGCCGGCG--CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 24326 0.66 0.784793
Target:  5'- cGCaCGGUGcUGGCcucgGGCCGCguguucGGCCCg -3'
miRNA:   3'- -CGaGUCAUuGCCGug--CCGGCG------CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 76558 0.66 0.784793
Target:  5'- gGCUgCGGga--GGUGCuGGCCGCgcgcgagcgccgGGCCCa -3'
miRNA:   3'- -CGA-GUCauugCCGUG-CCGGCG------------CCGGG- -5'
5937 5' -59.5 NC_001806.1 + 2767 0.66 0.784793
Target:  5'- gGCgCGGgcgGGCcuGCGCcGCgGCGGCCCg -3'
miRNA:   3'- -CGaGUCa--UUGc-CGUGcCGgCGCCGGG- -5'
5937 5' -59.5 NC_001806.1 + 108539 0.66 0.784793
Target:  5'- gGCcCGcGU-GCGGC-UGGCCGC-GCCCg -3'
miRNA:   3'- -CGaGU-CAuUGCCGuGCCGGCGcCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.