miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5942 5' -56.7 NC_001806.1 + 135406 0.66 0.878491
Target:  5'- aGGCGCgacaGGCgCUCCAGGUCcuggGCGuACGa -3'
miRNA:   3'- aCUGCGg---UCGaGAGGUCCAG----CGU-UGU- -5'
5942 5' -56.7 NC_001806.1 + 22156 0.66 0.878491
Target:  5'- cGACGCCGGUUCgaggCCucGGG-CGCcccGGCGg -3'
miRNA:   3'- aCUGCGGUCGAGa---GG--UCCaGCG---UUGU- -5'
5942 5' -56.7 NC_001806.1 + 136366 0.66 0.87123
Target:  5'- cGGgGCCGGCgcgCUCCGcGGccucCGCGACc -3'
miRNA:   3'- aCUgCGGUCGa--GAGGU-CCa---GCGUUGu -5'
5942 5' -56.7 NC_001806.1 + 151322 0.66 0.870492
Target:  5'- cUGGCGCCGGCUCgggcggggggcugUCCGGccaGUCGUcguCAu -3'
miRNA:   3'- -ACUGCGGUCGAG-------------AGGUC---CAGCGuu-GU- -5'
5942 5' -56.7 NC_001806.1 + 109170 0.66 0.863752
Target:  5'- cGGCGCgGgGCUcCUCCAgcgcccGGUCuGCGGCAu -3'
miRNA:   3'- aCUGCGgU-CGA-GAGGU------CCAG-CGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 92962 0.66 0.856064
Target:  5'- gGACGCCGuggacGCgcaUCCGGG-CGCGugGa -3'
miRNA:   3'- aCUGCGGU-----CGag-AGGUCCaGCGUugU- -5'
5942 5' -56.7 NC_001806.1 + 121614 0.66 0.856064
Target:  5'- -aACGCacuguGGCUCUCCuccGUCGUAACGg -3'
miRNA:   3'- acUGCGg----UCGAGAGGuc-CAGCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 111772 0.66 0.848173
Target:  5'- cGACGCgAGUUCgacgCCcugcugGGGUCGUAuuGCAa -3'
miRNA:   3'- aCUGCGgUCGAGa---GG------UCCAGCGU--UGU- -5'
5942 5' -56.7 NC_001806.1 + 74138 0.66 0.848173
Target:  5'- -aGCGCCaaGGCUCUaCAGGccaGCGACAa -3'
miRNA:   3'- acUGCGG--UCGAGAgGUCCag-CGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 54080 0.66 0.848173
Target:  5'- cGACGCCAa--C-CCAGGcCGCGGCGg -3'
miRNA:   3'- aCUGCGGUcgaGaGGUCCaGCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 123765 0.67 0.831803
Target:  5'- gGGCGCCccAGCggccccucUCUCCAGGaCGCcGCc -3'
miRNA:   3'- aCUGCGG--UCG--------AGAGGUCCaGCGuUGu -5'
5942 5' -56.7 NC_001806.1 + 86285 0.67 0.82334
Target:  5'- gGAUGUCc-CUCUCCGGGUCGguGa- -3'
miRNA:   3'- aCUGCGGucGAGAGGUCCAGCguUgu -5'
5942 5' -56.7 NC_001806.1 + 44310 0.67 0.82334
Target:  5'- uUGGCGCCGGC-CUCgaGGGUCaCAGgAa -3'
miRNA:   3'- -ACUGCGGUCGaGAGg-UCCAGcGUUgU- -5'
5942 5' -56.7 NC_001806.1 + 96450 0.67 0.81383
Target:  5'- gUGGCGUCGGCggcuccgagUUCCcccggcacgccugGGGUCGCGGCc -3'
miRNA:   3'- -ACUGCGGUCGa--------GAGG-------------UCCAGCGUUGu -5'
5942 5' -56.7 NC_001806.1 + 60651 0.67 0.805897
Target:  5'- --cCGCCcgAGCUCgUCCAGGUcccgaacgCGCAGCu -3'
miRNA:   3'- acuGCGG--UCGAG-AGGUCCA--------GCGUUGu -5'
5942 5' -56.7 NC_001806.1 + 5584 0.68 0.78782
Target:  5'- cGACGCCGGCacgCCGGGggccCGUGGCc -3'
miRNA:   3'- aCUGCGGUCGagaGGUCCa---GCGUUGu -5'
5942 5' -56.7 NC_001806.1 + 82923 0.68 0.78782
Target:  5'- -cGCGuCUAGaCUCUCCAGGgucugggacCGCAGCGc -3'
miRNA:   3'- acUGC-GGUC-GAGAGGUCCa--------GCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 100016 0.68 0.778566
Target:  5'- -cGCGuCCGGUUCgUCCuGGUCGCAGu- -3'
miRNA:   3'- acUGC-GGUCGAG-AGGuCCAGCGUUgu -5'
5942 5' -56.7 NC_001806.1 + 6247 0.68 0.778566
Target:  5'- cGACGCCccGGCUCgggaUCGGGaUCGCAuCGg -3'
miRNA:   3'- aCUGCGG--UCGAGa---GGUCC-AGCGUuGU- -5'
5942 5' -56.7 NC_001806.1 + 144576 0.68 0.769179
Target:  5'- gGGCGCguccgggugccgCGGCUCUCCGGGccccccUGCAGCc -3'
miRNA:   3'- aCUGCG------------GUCGAGAGGUCCa-----GCGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.