miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5944 5' -57.4 NC_001806.1 + 21287 0.66 0.882389
Target:  5'- cGGCGGGACGGGagg-GCCCCcgCggcgGGCa -3'
miRNA:   3'- -CUGCUUUGCCUggagCGGGGa-Ga---CCG- -5'
5944 5' -57.4 NC_001806.1 + 10857 0.66 0.882389
Target:  5'- -cUGGGuCGGGCCgCGCCCCguaGGCc -3'
miRNA:   3'- cuGCUUuGCCUGGaGCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 125492 0.66 0.88031
Target:  5'- aGACGAAAagcccCGGGCCgcgUCGCCggcacuuucugacgCCUCagGGCc -3'
miRNA:   3'- -CUGCUUU-----GCCUGG---AGCGG--------------GGAGa-CCG- -5'
5944 5' -57.4 NC_001806.1 + 10399 0.66 0.875385
Target:  5'- gGGgGAGGCGGgaGCCgggggGUCCCgCUGGCg -3'
miRNA:   3'- -CUgCUUUGCC--UGGag---CGGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 92923 0.66 0.875385
Target:  5'- gGGCGggGCGGGCCUgGaggCCgg-GGCc -3'
miRNA:   3'- -CUGCuuUGCCUGGAgCgg-GGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 68251 0.66 0.875385
Target:  5'- aACGggGCGGACgaCccgGCgUUUCUGGCc -3'
miRNA:   3'- cUGCuuUGCCUGgaG---CGgGGAGACCG- -5'
5944 5' -57.4 NC_001806.1 + 120847 0.66 0.875385
Target:  5'- uGGCGcAGCugGGACCccggCGgCCC-CUGGCg -3'
miRNA:   3'- -CUGCuUUG--CCUGGa---GCgGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 90568 0.66 0.868171
Target:  5'- --gGAccCGGACCgCGCCCUccuguaUCUGGUc -3'
miRNA:   3'- cugCUuuGCCUGGaGCGGGG------AGACCG- -5'
5944 5' -57.4 NC_001806.1 + 92099 0.66 0.867438
Target:  5'- cGCGu-GCGGGCCgUGCCCCcugcuucagcuucUCgGGCg -3'
miRNA:   3'- cUGCuuUGCCUGGaGCGGGG-------------AGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 23635 0.66 0.865227
Target:  5'- -cCGAGcucACGGACCacccgcuguucccCGUCCC-CUGGCg -3'
miRNA:   3'- cuGCUU---UGCCUGGa------------GCGGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 86325 0.66 0.86075
Target:  5'- uACGAgGACGGccccgaacGCCUgcaGUCCCUCgGGCa -3'
miRNA:   3'- cUGCU-UUGCC--------UGGAg--CGGGGAGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 56612 0.66 0.86075
Target:  5'- aGACGuuuuCGGGCCgCGCgaCC-CUGGCc -3'
miRNA:   3'- -CUGCuuu-GCCUGGaGCGg-GGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 4473 0.66 0.86075
Target:  5'- cGCGcucGACGGACCcCGCCCgaC-GGCc -3'
miRNA:   3'- cUGCu--UUGCCUGGaGCGGGgaGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 23793 0.66 0.86075
Target:  5'- cACGggGCcgccgGGGgC-CGCCUCUUUGGCc -3'
miRNA:   3'- cUGCuuUG-----CCUgGaGCGGGGAGACCG- -5'
5944 5' -57.4 NC_001806.1 + 65636 0.66 0.85313
Target:  5'- gGGCGAGAgGGgccccggcgGCCUC-CCCCUgggUGGCu -3'
miRNA:   3'- -CUGCUUUgCC---------UGGAGcGGGGAg--ACCG- -5'
5944 5' -57.4 NC_001806.1 + 95306 0.66 0.845315
Target:  5'- gGGCGcgGCGGACg-CGCCCaag-GGCg -3'
miRNA:   3'- -CUGCuuUGCCUGgaGCGGGgagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 3316 0.66 0.845315
Target:  5'- cGGgGAAGCgGGGCC-CGCggguCCCUCcGGCc -3'
miRNA:   3'- -CUgCUUUG-CCUGGaGCG----GGGAGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 68938 0.66 0.845315
Target:  5'- uGACGAcccccgAGCGGGgggcuguggucCCgcCGCCCCUgUUGGCg -3'
miRNA:   3'- -CUGCU------UUGCCU-----------GGa-GCGGGGA-GACCG- -5'
5944 5' -57.4 NC_001806.1 + 2766 0.66 0.845315
Target:  5'- gGGCGcGGGCGGGCCUgCGCCgCggcGGCc -3'
miRNA:   3'- -CUGC-UUUGCCUGGA-GCGGgGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 132863 0.66 0.842934
Target:  5'- gGACGgcGCgguuuugcuuccccGGACUUCGCgCCCagcucCUGGCg -3'
miRNA:   3'- -CUGCuuUG--------------CCUGGAGCG-GGGa----GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.