miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5945 5' -57.2 NC_001806.1 + 150674 0.66 0.875167
Target:  5'- cCCCGCCGCgcuGGCGGCc-GCc--- -3'
miRNA:   3'- aGGGCGGCGauuCCGCUGcuCGuucu -5'
5945 5' -57.2 NC_001806.1 + 96364 0.66 0.875167
Target:  5'- gUCCCGCCauGCgccAGGGCGccccCGcGCGGGGg -3'
miRNA:   3'- -AGGGCGG--CGa--UUCCGCu---GCuCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 147500 0.66 0.875167
Target:  5'- --gCGCCGgagGGGGCGGCGccGCGGGAg -3'
miRNA:   3'- aggGCGGCga-UUCCGCUGCu-CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 106862 0.66 0.875167
Target:  5'- uUCUCGggggaCGC--GGGCGcCGAGCAGGGc -3'
miRNA:   3'- -AGGGCg----GCGauUCCGCuGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 4333 0.66 0.875167
Target:  5'- -aCCGCCGCgcGGGCccGGCGGcGCucGAu -3'
miRNA:   3'- agGGCGGCGauUCCG--CUGCU-CGuuCU- -5'
5945 5' -57.2 NC_001806.1 + 23044 0.66 0.875167
Target:  5'- aCCUGCgCGUggccGGCGGC-AGCGAGGc -3'
miRNA:   3'- aGGGCG-GCGauu-CCGCUGcUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 33615 0.66 0.875167
Target:  5'- -aCCGgCGC-GGGGCGGgGGGCcGGAu -3'
miRNA:   3'- agGGCgGCGaUUCCGCUgCUCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 3431 0.66 0.867884
Target:  5'- aUCCCGCgGC--AGGCGGCcaGGCAc-- -3'
miRNA:   3'- -AGGGCGgCGauUCCGCUGc-UCGUucu -5'
5945 5' -57.2 NC_001806.1 + 24277 0.66 0.865658
Target:  5'- gCCCGCCGUgcAGuGCGccgugcgcuggccgGCGGcGCGGGAc -3'
miRNA:   3'- aGGGCGGCGauUC-CGC--------------UGCU-CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 68964 0.66 0.863413
Target:  5'- gUCCCGCCGCcccuguuGGCGcaguuucagcacacCGuGCGGGAg -3'
miRNA:   3'- -AGGGCGGCGauu----CCGCu-------------GCuCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 63633 0.66 0.860392
Target:  5'- uUCUCGCCGUccAGGUGGCGAauCAGGc -3'
miRNA:   3'- -AGGGCGGCGauUCCGCUGCUc-GUUCu -5'
5945 5' -57.2 NC_001806.1 + 77495 0.66 0.860392
Target:  5'- cUgCGCCGCcGGGGCGaggcguaccuGCGAGUGAGc -3'
miRNA:   3'- aGgGCGGCGaUUCCGC----------UGCUCGUUCu -5'
5945 5' -57.2 NC_001806.1 + 151176 0.66 0.860392
Target:  5'- cUCCGCggugaCGCgcAGGCGGaGGGCGAGGc -3'
miRNA:   3'- aGGGCG-----GCGauUCCGCUgCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 122873 0.66 0.858869
Target:  5'- -gCCGCCGCgccacggccgagAAGaGCGGCGAGUg--- -3'
miRNA:   3'- agGGCGGCGa-----------UUC-CGCUGCUCGuucu -5'
5945 5' -57.2 NC_001806.1 + 147174 0.66 0.852696
Target:  5'- cCCCGCC-CgagGAGGCGGaagcgGAGgAGGAc -3'
miRNA:   3'- aGGGCGGcGa--UUCCGCUg----CUCgUUCU- -5'
5945 5' -57.2 NC_001806.1 + 5745 0.66 0.852696
Target:  5'- gUUCCGCaUGCUaacGAGGa-ACGGGCAGGGg -3'
miRNA:   3'- -AGGGCG-GCGA---UUCCgcUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 103197 0.66 0.851133
Target:  5'- cUCCGCCGCcgucucccggggGAGGUuaaaGACGGGCGAc- -3'
miRNA:   3'- aGGGCGGCGa-----------UUCCG----CUGCUCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 4654 0.66 0.844804
Target:  5'- cUCCGCgGCggcuGGGcCGGCGGGCGcGGc -3'
miRNA:   3'- aGGGCGgCGau--UCC-GCUGCUCGUuCU- -5'
5945 5' -57.2 NC_001806.1 + 22716 0.66 0.844804
Target:  5'- cUCCC-CCGCggGGGGCGACGAc----- -3'
miRNA:   3'- -AGGGcGGCGa-UUCCGCUGCUcguucu -5'
5945 5' -57.2 NC_001806.1 + 41450 0.66 0.844004
Target:  5'- -gCCGCCGCUucGGCGgacACGAccgcuucggccagGCGAGc -3'
miRNA:   3'- agGGCGGCGAuuCCGC---UGCU-------------CGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.