miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 3' -52.5 NC_001806.1 + 103576 0.66 0.986523
Target:  5'- -gUCUGAcGCGgGGGGAGGggGaaGGa -3'
miRNA:   3'- gaAGGUUuUGCgCUCCUCCuaCggCC- -5'
5946 3' -52.5 NC_001806.1 + 62461 0.66 0.984805
Target:  5'- --aCCAGAAgGCGgaccaGGGuGGAgGCUGGg -3'
miRNA:   3'- gaaGGUUUUgCGC-----UCCuCCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 6655 0.66 0.984805
Target:  5'- gCUUCCugcuCGuCGGGGGGGAgcaUGUCGu -3'
miRNA:   3'- -GAAGGuuuuGC-GCUCCUCCU---ACGGCc -5'
5946 3' -52.5 NC_001806.1 + 21317 0.66 0.984805
Target:  5'- --aCCG--ACGCcGGcGAGGAcGCCGGg -3'
miRNA:   3'- gaaGGUuuUGCGcUC-CUCCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 95562 0.66 0.984805
Target:  5'- -gUCCGcgagcAGCGCGGGGAGcucgagaaGAUGCUGcGg -3'
miRNA:   3'- gaAGGUu----UUGCGCUCCUC--------CUACGGC-C- -5'
5946 3' -52.5 NC_001806.1 + 133700 0.66 0.984805
Target:  5'- -gUCCcGGAgGCGGGGAGucgGUCGGc -3'
miRNA:   3'- gaAGGuUUUgCGCUCCUCcuaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 99572 0.66 0.982926
Target:  5'- -aUCCGGuGGCgGCGGGGGGGAacGCgGGc -3'
miRNA:   3'- gaAGGUU-UUG-CGCUCCUCCUa-CGgCC- -5'
5946 3' -52.5 NC_001806.1 + 52589 0.66 0.982926
Target:  5'- --cCCGGGggggcaucGCGCGGGGgguGGGAccUGUCGGg -3'
miRNA:   3'- gaaGGUUU--------UGCGCUCC---UCCU--ACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 21747 0.66 0.982926
Target:  5'- --aCCAcgcACGCGAGGcgcGGGccGUCGGg -3'
miRNA:   3'- gaaGGUuu-UGCGCUCC---UCCuaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 72633 0.66 0.982926
Target:  5'- -cUCCGAGACaucccGGGGGAcgGCCGGu -3'
miRNA:   3'- gaAGGUUUUGcgcu-CCUCCUa-CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 37827 0.66 0.980877
Target:  5'- --gCCAGcgucauuaGCGGGGGGGGUGCUuGGc -3'
miRNA:   3'- gaaGGUUuug-----CGCUCCUCCUACGG-CC- -5'
5946 3' -52.5 NC_001806.1 + 143261 0.66 0.980877
Target:  5'- ----gGGGAUGUGGGcGGGGGUGCgCGGg -3'
miRNA:   3'- gaaggUUUUGCGCUC-CUCCUACG-GCC- -5'
5946 3' -52.5 NC_001806.1 + 53378 0.66 0.980877
Target:  5'- --aCCAagcuuAAACGCGaAGGAcgccGGA-GCCGGu -3'
miRNA:   3'- gaaGGU-----UUUGCGC-UCCU----CCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 62318 0.66 0.978649
Target:  5'- --gCCu-GGCGCgGAGGGGGuuUGUCGGu -3'
miRNA:   3'- gaaGGuuUUGCG-CUCCUCCu-ACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 89778 0.66 0.978649
Target:  5'- ---gCGGGGCGUG-GGAGGG-GCUGGg -3'
miRNA:   3'- gaagGUUUUGCGCuCCUCCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 34783 0.66 0.978649
Target:  5'- gUUCgGGGGgGgGGGGGGGggGCgGGa -3'
miRNA:   3'- gAAGgUUUUgCgCUCCUCCuaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 95451 0.67 0.976234
Target:  5'- --cCCGAGACGUG-GGGGGAcaucGCCa- -3'
miRNA:   3'- gaaGGUUUUGCGCuCCUCCUa---CGGcc -5'
5946 3' -52.5 NC_001806.1 + 147287 0.67 0.976234
Target:  5'- --gCCGAgGACGUcAGGGGGGUcCCGGg -3'
miRNA:   3'- gaaGGUU-UUGCGcUCCUCCUAcGGCC- -5'
5946 3' -52.5 NC_001806.1 + 66784 0.67 0.975472
Target:  5'- -gUCCAcGAACGCacaugccGGGAGGAUcacggccgagcgggGCCGGc -3'
miRNA:   3'- gaAGGU-UUUGCGc------UCCUCCUA--------------CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 145671 0.67 0.973626
Target:  5'- -cUCUGGcACGCGGGGguGGGAaggGUCGGg -3'
miRNA:   3'- gaAGGUUuUGCGCUCC--UCCUa--CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.