miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 5' -62.7 NC_001806.1 + 125584 0.66 0.680082
Target:  5'- -cCCG-CGaCCCGGaCGCCGaUCCCGa- -3'
miRNA:   3'- caGGCaGC-GGGCCaGUGGC-AGGGCcg -5'
5946 5' -62.7 NC_001806.1 + 100651 0.66 0.680082
Target:  5'- -gCCGcCGCUCGGcCACCaggcuccagcgGUCCCGcaGCa -3'
miRNA:   3'- caGGCaGCGGGCCaGUGG-----------CAGGGC--CG- -5'
5946 5' -62.7 NC_001806.1 + 125717 0.66 0.680082
Target:  5'- cGUCCG-CGCCCcucuGGcCAUCGgUCCCcucuGGCc -3'
miRNA:   3'- -CAGGCaGCGGG----CCaGUGGC-AGGG----CCG- -5'
5946 5' -62.7 NC_001806.1 + 96636 0.66 0.680082
Target:  5'- -aCCGUCGCCgCGGgccaCGCCa-CCCuGCg -3'
miRNA:   3'- caGGCAGCGG-GCCa---GUGGcaGGGcCG- -5'
5946 5' -62.7 NC_001806.1 + 102972 0.66 0.680082
Target:  5'- -cCCGUCGCCCccaccCGCCGgcucaucCCCGcGCg -3'
miRNA:   3'- caGGCAGCGGGcca--GUGGCa------GGGC-CG- -5'
5946 5' -62.7 NC_001806.1 + 120731 0.66 0.680082
Target:  5'- cGUCCGggaaCGgCCGGUCucgcuagcggcGCCuuccCCCGGCc -3'
miRNA:   3'- -CAGGCa---GCgGGCCAG-----------UGGca--GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 20369 0.66 0.67051
Target:  5'- -cCCGcCGUCCcguuGGUC-CCGgcgUCCGGCg -3'
miRNA:   3'- caGGCaGCGGG----CCAGuGGCa--GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 86838 0.66 0.67051
Target:  5'- aUCuCG-CGgCCGauggucGUCACCGUCgCGGCa -3'
miRNA:   3'- cAG-GCaGCgGGC------CAGUGGCAGgGCCG- -5'
5946 5' -62.7 NC_001806.1 + 64851 0.66 0.67051
Target:  5'- gGUCCGaaaGCCCcucCGCgCGUCCCGGg -3'
miRNA:   3'- -CAGGCag-CGGGccaGUG-GCAGGGCCg -5'
5946 5' -62.7 NC_001806.1 + 44597 0.66 0.660911
Target:  5'- -gCCGUC-CCCGuGUU-CCGUCugaaCCGGCg -3'
miRNA:   3'- caGGCAGcGGGC-CAGuGGCAG----GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 90892 0.66 0.660911
Target:  5'- -gCCGUgGCCCgcgcGGcCGCCcaCCUGGCg -3'
miRNA:   3'- caGGCAgCGGG----CCaGUGGcaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 141672 0.66 0.660911
Target:  5'- aGUCCGUgCGCCUggccgggguGGUgAUauggGUCCUGGCc -3'
miRNA:   3'- -CAGGCA-GCGGG---------CCAgUGg---CAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 147562 0.66 0.65129
Target:  5'- -gCCGcgCGCCaccGUCGCaCGcgCCCGGCa -3'
miRNA:   3'- caGGCa-GCGGgc-CAGUG-GCa-GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 143536 0.66 0.65129
Target:  5'- -cCCGgcccgGCCCGG-C-CCGgCCCGGCc -3'
miRNA:   3'- caGGCag---CGGGCCaGuGGCaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 3380 0.66 0.650327
Target:  5'- -cCCGggacggcCGCCaGGUCGCCGUCgaagcccUCGGCc -3'
miRNA:   3'- caGGCa------GCGGgCCAGUGGCAG-------GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 22876 0.66 0.641657
Target:  5'- -gCCGUC-CCgGGgcugGCCGgggCCCGGCc -3'
miRNA:   3'- caGGCAGcGGgCCag--UGGCa--GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 93582 0.66 0.641657
Target:  5'- cGUUCGgcgGCCCGGgggCcCCGggaCCGGCa -3'
miRNA:   3'- -CAGGCag-CGGGCCa--GuGGCag-GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 57339 0.66 0.641657
Target:  5'- cGUCCGUCGUcgaCCcGUCccugGCCGUCCuccggggacaCGGCc -3'
miRNA:   3'- -CAGGCAGCG---GGcCAG----UGGCAGG----------GCCG- -5'
5946 5' -62.7 NC_001806.1 + 104920 0.66 0.622376
Target:  5'- cGUUCGUgGCCCucauccCGCCGaccuugCCCGGCa -3'
miRNA:   3'- -CAGGCAgCGGGcca---GUGGCa-----GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 52750 0.67 0.612742
Target:  5'- uUCCGgaugcgaaCGaCCCGGUCGCCGagCCCcccgcugcGGCc -3'
miRNA:   3'- cAGGCa-------GC-GGGCCAGUGGCa-GGG--------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.