miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5949 5' -63.1 NC_001806.1 + 56710 0.66 0.629538
Target:  5'- cCGGGUCGcucuggGUCC-UCCGGgGGGCgGc -3'
miRNA:   3'- -GUCCGGCa-----UAGGcAGGCCgCCCGgCa -5'
5949 5' -63.1 NC_001806.1 + 22421 0.66 0.619821
Target:  5'- -cGGCCGg--CCGcUUCGGCugGGGCCu- -3'
miRNA:   3'- guCCGGCauaGGC-AGGCCG--CCCGGca -5'
5949 5' -63.1 NC_001806.1 + 20626 0.66 0.619821
Target:  5'- gGGGCCGgggGUUCGaCCaaCGGGCCGc -3'
miRNA:   3'- gUCCGGCa--UAGGCaGGccGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 102893 0.66 0.610113
Target:  5'- uGGuGUCGUAU-CGUagCGGCGGGUCGUu -3'
miRNA:   3'- gUC-CGGCAUAgGCAg-GCCGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 146075 0.66 0.610113
Target:  5'- gAGGCCagGUCaGUCCgGGCGGGCa-- -3'
miRNA:   3'- gUCCGGcaUAGgCAGG-CCGCCCGgca -5'
5949 5' -63.1 NC_001806.1 + 49501 0.66 0.610113
Target:  5'- gCGGGUCGgcgGUUCG-CgGGUGGcGCCGUc -3'
miRNA:   3'- -GUCCGGCa--UAGGCaGgCCGCC-CGGCA- -5'
5949 5' -63.1 NC_001806.1 + 69646 0.66 0.610113
Target:  5'- -uGGCgCGUAUCauggGUCCGGCcGuGCCGa -3'
miRNA:   3'- guCCG-GCAUAGg---CAGGCCGcC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 113680 0.66 0.600419
Target:  5'- -uGGCCGUGUaCCGggacCUGGUGGcGCaCGUc -3'
miRNA:   3'- guCCGGCAUA-GGCa---GGCCGCC-CG-GCA- -5'
5949 5' -63.1 NC_001806.1 + 146761 0.66 0.590746
Target:  5'- gAGGCUGUuccacUCCGaCgCGG-GGGCCGUc -3'
miRNA:   3'- gUCCGGCAu----AGGCaG-GCCgCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 95050 0.66 0.590746
Target:  5'- -uGGCCGUggaacuggcgcuGUUCGggCGGCGGGCgGa -3'
miRNA:   3'- guCCGGCA------------UAGGCagGCCGCCCGgCa -5'
5949 5' -63.1 NC_001806.1 + 17459 0.66 0.582064
Target:  5'- -cGGUCGUcGUUCGUCCGGCcaaccuucgacgguuGGCCGa -3'
miRNA:   3'- guCCGGCA-UAGGCAGGCCGc--------------CCGGCa -5'
5949 5' -63.1 NC_001806.1 + 94388 0.66 0.581101
Target:  5'- uCAGGCUGgauaCGUauGGCGGGaCCGUc -3'
miRNA:   3'- -GUCCGGCauagGCAggCCGCCC-GGCA- -5'
5949 5' -63.1 NC_001806.1 + 30763 0.67 0.575329
Target:  5'- gGGGCCGcGUCCuccUCCgcuuccgccuccucgGGCgGGGCCGUc -3'
miRNA:   3'- gUCCGGCaUAGGc--AGG---------------CCG-CCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 42638 0.67 0.571488
Target:  5'- -cGGCgGcGUCgCGUCCGGUgcggGGGCUGg -3'
miRNA:   3'- guCCGgCaUAG-GCAGGCCG----CCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 101837 0.67 0.567654
Target:  5'- aGGGCgGUGaggcgcaccagcgCCGcCUGGCGGGCCc- -3'
miRNA:   3'- gUCCGgCAUa------------GGCaGGCCGCCCGGca -5'
5949 5' -63.1 NC_001806.1 + 54651 0.67 0.567654
Target:  5'- uGGGCCGUAacggccgacuuagCCG-CCGGUgagGGGUCGUc -3'
miRNA:   3'- gUCCGGCAUa------------GGCaGGCCG---CCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 15703 0.67 0.561915
Target:  5'- cCAGGCCG-GUCgGguguaCGGCGGGCg-- -3'
miRNA:   3'- -GUCCGGCaUAGgCag---GCCGCCCGgca -5'
5949 5' -63.1 NC_001806.1 + 76638 0.67 0.552385
Target:  5'- aAGGUgGUcgCCGUcCCGGCGaccguGGCCa- -3'
miRNA:   3'- gUCCGgCAuaGGCA-GGCCGC-----CCGGca -5'
5949 5' -63.1 NC_001806.1 + 64819 0.67 0.542904
Target:  5'- gUAGGCCGUGcCCGUucccagacguggCCGG-GGGuCCGa -3'
miRNA:   3'- -GUCCGGCAUaGGCA------------GGCCgCCC-GGCa -5'
5949 5' -63.1 NC_001806.1 + 10592 0.67 0.542904
Target:  5'- aCAGGCCGcUGUCCGUCUcuCGGaccCCGUg -3'
miRNA:   3'- -GUCCGGC-AUAGGCAGGccGCCc--GGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.