miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 81061 0.66 0.893899
Target:  5'- --cGCCGGgcgcugcuucaucacAGCGacGCCGUGCugACCAGc -3'
miRNA:   3'- gucCGGCU---------------UUGC--CGGUACGugUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 30292 0.66 0.893899
Target:  5'- gGGGCgGAGcCGGCCGcccgccccgcggacGCGCGCCGu -3'
miRNA:   3'- gUCCGgCUUuGCCGGUa-------------CGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 147757 0.66 0.89122
Target:  5'- gCGGGucCCGAcGCGGCCGcGgACGCgGGg -3'
miRNA:   3'- -GUCC--GGCUuUGCCGGUaCgUGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 135974 0.66 0.89122
Target:  5'- gAGGCgCGAGGCGGCCG---AC-CCGGc -3'
miRNA:   3'- gUCCG-GCUUUGCCGGUacgUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 75718 0.66 0.89122
Target:  5'- uGGGCCGccGACguggaGGCCGUGCugGaCCGc -3'
miRNA:   3'- gUCCGGCu-UUG-----CCGGUACGugU-GGUc -5'
5956 3' -56.4 NC_001806.1 + 75477 0.66 0.890544
Target:  5'- cCAGGCCGcGACGcGCgcgaccaCcgGCGCGCgGGa -3'
miRNA:   3'- -GUCCGGCuUUGC-CG-------GuaCGUGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 134299 0.66 0.890544
Target:  5'- aGGGCCGAGagaacggGgGGCgGguUGUugGCCAGc -3'
miRNA:   3'- gUCCGGCUU-------UgCCGgU--ACGugUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 132188 0.66 0.884362
Target:  5'- uGGGCgCGccuGGCGGCCAUucGCgACACCc- -3'
miRNA:   3'- gUCCG-GCu--UUGCCGGUA--CG-UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 57048 0.66 0.884362
Target:  5'- gGGGCCGggGCccccGGC--UGCGUGCCGGg -3'
miRNA:   3'- gUCCGGCuuUG----CCGguACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 78785 0.66 0.884362
Target:  5'- gCGGGCCGGAcGCcGCCuUGCGCgauGCCGu -3'
miRNA:   3'- -GUCCGGCUU-UGcCGGuACGUG---UGGUc -5'
5956 3' -56.4 NC_001806.1 + 91007 0.66 0.884362
Target:  5'- gCGGGCgCGAcggcGGCGGCaaggGCGCGgCGGg -3'
miRNA:   3'- -GUCCG-GCU----UUGCCGgua-CGUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 144615 0.66 0.884362
Target:  5'- --aGCCGggGCGGCCAagGgGCGUCGGc -3'
miRNA:   3'- gucCGGCuuUGCCGGUa-CgUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 75245 0.66 0.884362
Target:  5'- -uGGUCGAcgcgguGACGGCCcuggGCGCggccGCCAGc -3'
miRNA:   3'- guCCGGCU------UUGCCGGua--CGUG----UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 112852 0.66 0.884362
Target:  5'- -cGGUCauGGAACGguuuGCCGcGCACGCCGGg -3'
miRNA:   3'- guCCGG--CUUUGC----CGGUaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 34533 0.66 0.880139
Target:  5'- gCGGGCCGGGccgcucguaagagccGCGaCCcgGC-CGCCGGg -3'
miRNA:   3'- -GUCCGGCUU---------------UGCcGGuaCGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 82864 0.66 0.877279
Target:  5'- gGGGUcauauccuCGAaccaGACGGCCGcgucaUGCGCGCCGu -3'
miRNA:   3'- gUCCG--------GCU----UUGCCGGU-----ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 49371 0.66 0.877279
Target:  5'- cCGGGcCCGAuGCGGCCcguagccagucgGUGCGCggucGCCuGg -3'
miRNA:   3'- -GUCC-GGCUuUGCCGG------------UACGUG----UGGuC- -5'
5956 3' -56.4 NC_001806.1 + 38604 0.66 0.869976
Target:  5'- -uGGuuGGAacACGGC--UGCACACCAc -3'
miRNA:   3'- guCCggCUU--UGCCGguACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 13605 0.66 0.869976
Target:  5'- gGGGCUGGAACgGGUCcgGUAgGCCc- -3'
miRNA:   3'- gUCCGGCUUUG-CCGGuaCGUgUGGuc -5'
5956 3' -56.4 NC_001806.1 + 2402 0.66 0.869976
Target:  5'- cCAGGCCGccauGCGGCgCA-GCGgGCCc- -3'
miRNA:   3'- -GUCCGGCuu--UGCCG-GUaCGUgUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.