miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5957 5' -58.9 NC_001806.1 + 83025 0.66 0.803567
Target:  5'- -uUCGCCCcCCGGggUCCUG-GCGAGCg -3'
miRNA:   3'- uuGGUGGGcGGCC--AGGAUgCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 106110 0.66 0.803567
Target:  5'- uACCugCUcgGCCGGcCCccgaACGCGAGCc -3'
miRNA:   3'- uUGGugGG--CGGCCaGGa---UGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 99949 0.66 0.803567
Target:  5'- gGGCCGCgCGCCGGgagucgacCCcGCGCGGcGCg -3'
miRNA:   3'- -UUGGUGgGCGGCCa-------GGaUGCGCU-UGa -5'
5957 5' -58.9 NC_001806.1 + 108553 0.66 0.794734
Target:  5'- uGGCCgcGCCCGCCGcUCCgcggucaaACGCGGAa- -3'
miRNA:   3'- -UUGG--UGGGCGGCcAGGa-------UGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 43081 0.66 0.794734
Target:  5'- uAACgCACCCGUCGGUCgCauaaaGCGCGGu-- -3'
miRNA:   3'- -UUG-GUGGGCGGCCAG-Ga----UGCGCUuga -5'
5957 5' -58.9 NC_001806.1 + 66281 0.66 0.789366
Target:  5'- cGCCACUCGCCGGggcgccacaccacgCCUuccagaaugacaACGgGGACg -3'
miRNA:   3'- uUGGUGGGCGGCCa-------------GGA------------UGCgCUUGa -5'
5957 5' -58.9 NC_001806.1 + 2120 0.66 0.785759
Target:  5'- cACgGCCCcggcgaagGCCaGGUCCcGCGUGGACa -3'
miRNA:   3'- uUGgUGGG--------CGG-CCAGGaUGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 17521 0.66 0.780309
Target:  5'- -cCCACCCGCCcgaucgugcgcacuaGGUCCUGuCGCu---- -3'
miRNA:   3'- uuGGUGGGCGG---------------CCAGGAU-GCGcuuga -5'
5957 5' -58.9 NC_001806.1 + 73114 0.66 0.776651
Target:  5'- cGGCCgGgCCGCCGGUCgCcgAgGCGGGCg -3'
miRNA:   3'- -UUGG-UgGGCGGCCAG-Ga-UgCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 30917 0.66 0.767416
Target:  5'- gGGCCGucCCCGCgGGcggCCUACGCGcuACc -3'
miRNA:   3'- -UUGGU--GGGCGgCCa--GGAUGCGCu-UGa -5'
5957 5' -58.9 NC_001806.1 + 113618 0.66 0.767416
Target:  5'- cGACUACUCGCUGGUCUcgUACGuCGuGACc -3'
miRNA:   3'- -UUGGUGGGCGGCCAGG--AUGC-GC-UUGa -5'
5957 5' -58.9 NC_001806.1 + 91767 0.66 0.767416
Target:  5'- aAACUACgCCGCCuucucGGcCCUgaagcGCGCGGACg -3'
miRNA:   3'- -UUGGUG-GGCGG-----CCaGGA-----UGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 77533 0.66 0.758066
Target:  5'- aGGCCcgggGCCC-CUGGUgCUGCGCGAGg- -3'
miRNA:   3'- -UUGG----UGGGcGGCCAgGAUGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 22743 0.66 0.758066
Target:  5'- cGCCGCCCGCCacgCCgACGCcGACg -3'
miRNA:   3'- uUGGUGGGCGGccaGGaUGCGcUUGa -5'
5957 5' -58.9 NC_001806.1 + 83192 0.66 0.758066
Target:  5'- uGCCGCCCGUCGGUacgCUcgACGaGGACg -3'
miRNA:   3'- uUGGUGGGCGGCCAg--GA--UGCgCUUGa -5'
5957 5' -58.9 NC_001806.1 + 144859 0.67 0.748606
Target:  5'- -cCCGCUCGCCGG-CaCgcgACGCGAAa- -3'
miRNA:   3'- uuGGUGGGCGGCCaG-Ga--UGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 50697 0.67 0.748606
Target:  5'- cGCCAUucuggCCGCCGGgcucgUCCUGCaGCGGcuGCUg -3'
miRNA:   3'- uUGGUG-----GGCGGCC-----AGGAUG-CGCU--UGA- -5'
5957 5' -58.9 NC_001806.1 + 1719 0.67 0.748606
Target:  5'- cGCCGCCCgGCC-GUCCaGCGCcGGCa -3'
miRNA:   3'- uUGGUGGG-CGGcCAGGaUGCGcUUGa -5'
5957 5' -58.9 NC_001806.1 + 75494 0.67 0.739048
Target:  5'- cGACCACCggCGCgCGGgaaagCCU-CGCGGGCc -3'
miRNA:   3'- -UUGGUGG--GCG-GCCa----GGAuGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 20167 0.67 0.739048
Target:  5'- cGCCGCCCGggcccgcccCCGGggCCgGCGCGGAg- -3'
miRNA:   3'- uUGGUGGGC---------GGCCa-GGaUGCGCUUga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.