miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5973 3' -65 NC_001806.1 + 79094 0.66 0.534567
Target:  5'- -cGCCGCCaGcGCCAC-CGacgAGGaCCCCu -3'
miRNA:   3'- gaCGGCGG-C-CGGUGcGCg--UCCaGGGG- -5'
5973 3' -65 NC_001806.1 + 2012 0.66 0.534567
Target:  5'- gUGCUGCCGcGaCAC-CGCGGG-CCCg -3'
miRNA:   3'- gACGGCGGC-CgGUGcGCGUCCaGGGg -5'
5973 3' -65 NC_001806.1 + 2123 0.66 0.534567
Target:  5'- -gGCC-CCGGCgAagGC-CAGGUCCCg -3'
miRNA:   3'- gaCGGcGGCCGgUg-CGcGUCCAGGGg -5'
5973 3' -65 NC_001806.1 + 20648 0.66 0.534567
Target:  5'- -gGCCG-CGGCCACGgGC----CCCCg -3'
miRNA:   3'- gaCGGCgGCCGGUGCgCGuccaGGGG- -5'
5973 3' -65 NC_001806.1 + 73120 0.66 0.534567
Target:  5'- -gGCCGCCGGUCGCcgagGCGggcgaggacgaCGGG-CCCa -3'
miRNA:   3'- gaCGGCGGCCGGUG----CGC-----------GUCCaGGGg -5'
5973 3' -65 NC_001806.1 + 23258 0.66 0.534567
Target:  5'- -cGCCGCCGccuccGCCGCGCcGCGGGa---- -3'
miRNA:   3'- gaCGGCGGC-----CGGUGCG-CGUCCagggg -5'
5973 3' -65 NC_001806.1 + 29961 0.66 0.534567
Target:  5'- -aGCCGCgGcGCCGCGgGgGGcGUcuggCCCCu -3'
miRNA:   3'- gaCGGCGgC-CGGUGCgCgUC-CA----GGGG- -5'
5973 3' -65 NC_001806.1 + 2662 0.66 0.531779
Target:  5'- -gGgCGgCGGCCGCGgGCgccgccguguggcuGGG-CCCCg -3'
miRNA:   3'- gaCgGCgGCCGGUGCgCG--------------UCCaGGGG- -5'
5973 3' -65 NC_001806.1 + 52925 0.66 0.525293
Target:  5'- -aGCCucgaUCGGCCACGgGUguGGGgacccgCCCCg -3'
miRNA:   3'- gaCGGc---GGCCGGUGCgCG--UCCa-----GGGG- -5'
5973 3' -65 NC_001806.1 + 49579 0.66 0.525293
Target:  5'- -aGCCGUCgGGCCggaggacgGCG-GCGGGgcccguUCCCCg -3'
miRNA:   3'- gaCGGCGG-CCGG--------UGCgCGUCC------AGGGG- -5'
5973 3' -65 NC_001806.1 + 52879 0.66 0.525293
Target:  5'- -cGCCGgCGGCgACGUGCcccUCCUCg -3'
miRNA:   3'- gaCGGCgGCCGgUGCGCGuccAGGGG- -5'
5973 3' -65 NC_001806.1 + 88375 0.66 0.525293
Target:  5'- -gGCCGCCGGCUgggcuaGCGUGUuguuccGG-CCCg -3'
miRNA:   3'- gaCGGCGGCCGG------UGCGCGu-----CCaGGGg -5'
5973 3' -65 NC_001806.1 + 90891 0.66 0.525293
Target:  5'- -cGCCG-UGGCC-CGCGCGGccgCCCa -3'
miRNA:   3'- gaCGGCgGCCGGuGCGCGUCca-GGGg -5'
5973 3' -65 NC_001806.1 + 150864 0.66 0.525293
Target:  5'- -cGCCggGCCGGCUcCGCGggcCAGGgCCCg -3'
miRNA:   3'- gaCGG--CGGCCGGuGCGC---GUCCaGGGg -5'
5973 3' -65 NC_001806.1 + 89003 0.66 0.522522
Target:  5'- -aGCCGCCcgacccgacgcggaGGaCguCGCGCucGUCCCCc -3'
miRNA:   3'- gaCGGCGG--------------CC-GguGCGCGucCAGGGG- -5'
5973 3' -65 NC_001806.1 + 36222 0.66 0.5216
Target:  5'- aUGCCGCUGGagcugauggaGCGCAGGUgCUg -3'
miRNA:   3'- gACGGCGGCCggug------CGCGUCCAgGGg -5'
5973 3' -65 NC_001806.1 + 92905 0.66 0.51608
Target:  5'- -gGCCGCgUGGUC-CGCGCAGGgcggggcgggCCUg -3'
miRNA:   3'- gaCGGCG-GCCGGuGCGCGUCCa---------GGGg -5'
5973 3' -65 NC_001806.1 + 109300 0.66 0.51608
Target:  5'- -aGgCGCCGGCgaaACGCcaGCGGGgCCCa -3'
miRNA:   3'- gaCgGCGGCCGg--UGCG--CGUCCaGGGg -5'
5973 3' -65 NC_001806.1 + 149652 0.66 0.51608
Target:  5'- aUGgCGcCCGGCuCcCGUGUaugaguggGGGUCCCCc -3'
miRNA:   3'- gACgGC-GGCCG-GuGCGCG--------UCCAGGGG- -5'
5973 3' -65 NC_001806.1 + 4360 0.66 0.51608
Target:  5'- aUGCgGCCcgcggaGGCC--GCGgGGGUCCUCg -3'
miRNA:   3'- gACGgCGG------CCGGugCGCgUCCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.