miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5974 5' -64.1 NC_001806.1 + 21539 0.66 0.591248
Target:  5'- gCCCcGCUaCGcGGCGCguauccggaCCcCACGGaCCGCc -3'
miRNA:   3'- -GGGuCGA-GC-CCGCG---------GGuGUGCC-GGCG- -5'
5974 5' -64.1 NC_001806.1 + 103041 0.66 0.591248
Target:  5'- cUCCAGCgccuccaGGGCGCCUgcgaucucguGCACGuuCCGUu -3'
miRNA:   3'- -GGGUCGag-----CCCGCGGG----------UGUGCc-GGCG- -5'
5974 5' -64.1 NC_001806.1 + 41561 0.66 0.591248
Target:  5'- aUCCGGUagaCGGGCaggggaGUCUGCACcGCCGCa -3'
miRNA:   3'- -GGGUCGa--GCCCG------CGGGUGUGcCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 6070 0.66 0.591248
Target:  5'- gCCGGCccCGGGggcggGCCCGgGCGGCgGg -3'
miRNA:   3'- gGGUCGa-GCCCg----CGGGUgUGCCGgCg -5'
5974 5' -64.1 NC_001806.1 + 149248 0.66 0.591248
Target:  5'- aCCGGagUCGGGgGUCC-CACGGCg-- -3'
miRNA:   3'- gGGUCg-AGCCCgCGGGuGUGCCGgcg -5'
5974 5' -64.1 NC_001806.1 + 95650 0.66 0.585518
Target:  5'- -aCGGCUuugCGGcgcgcgcgcgcuucuGCGCCCugACGGCgggCGCg -3'
miRNA:   3'- ggGUCGA---GCC---------------CGCGGGugUGCCG---GCG- -5'
5974 5' -64.1 NC_001806.1 + 64953 0.66 0.581704
Target:  5'- aCCGGCgUC-GGCGCCCG---GGCCGg -3'
miRNA:   3'- gGGUCG-AGcCCGCGGGUgugCCGGCg -5'
5974 5' -64.1 NC_001806.1 + 38408 0.66 0.581704
Target:  5'- gCCGGCUCGGGgggguccuCGUCCAgAUcGCUGUc -3'
miRNA:   3'- gGGUCGAGCCC--------GCGGGUgUGcCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 113646 0.66 0.581704
Target:  5'- aCCUAcCUCGGGgGagaCCuucccgaggaguGCAUGGCCGUg -3'
miRNA:   3'- -GGGUcGAGCCCgCg--GG------------UGUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 118593 0.66 0.581704
Target:  5'- cCCgCGGaCUCGGGgGaCCCGCAUcGCCu- -3'
miRNA:   3'- -GG-GUC-GAGCCCgC-GGGUGUGcCGGcg -5'
5974 5' -64.1 NC_001806.1 + 5885 0.66 0.581704
Target:  5'- aCgGGacggCGGGCgGCCCAag-GGCCGCc -3'
miRNA:   3'- gGgUCga--GCCCG-CGGGUgugCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 11353 0.66 0.581704
Target:  5'- gCCCAGCcgccccagCGGGCuCCgACucuucggcgAUGGCCGUc -3'
miRNA:   3'- -GGGUCGa-------GCCCGcGGgUG---------UGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 34855 0.66 0.581704
Target:  5'- cCCCAGCgUCGGGUG-UCACGgGGaaagaGCa -3'
miRNA:   3'- -GGGUCG-AGCCCGCgGGUGUgCCgg---CG- -5'
5974 5' -64.1 NC_001806.1 + 101450 0.66 0.581704
Target:  5'- aCCCAGCUCccgccguuGCGUUCACGCcaaccgccgGGCCGg -3'
miRNA:   3'- -GGGUCGAGcc------CGCGGGUGUG---------CCGGCg -5'
5974 5' -64.1 NC_001806.1 + 125975 0.66 0.581704
Target:  5'- aCCCuccGCUgGGGC-CCC-CAgGGuCCGUg -3'
miRNA:   3'- -GGGu--CGAgCCCGcGGGuGUgCC-GGCG- -5'
5974 5' -64.1 NC_001806.1 + 50485 0.66 0.581704
Target:  5'- gCCCuGCcccUGGGaaGCCC-CGCGGUCGUg -3'
miRNA:   3'- -GGGuCGa--GCCCg-CGGGuGUGCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 83482 0.66 0.581704
Target:  5'- gCCAaauGCcuggGGGCGCCC-CACuGcGCCGCu -3'
miRNA:   3'- gGGU---CGag--CCCGCGGGuGUG-C-CGGCG- -5'
5974 5' -64.1 NC_001806.1 + 56532 0.66 0.580751
Target:  5'- gCCCGGCguucccCGGGCauguucucgcaccGUCUugACGGCaagCGCg -3'
miRNA:   3'- -GGGUCGa-----GCCCG-------------CGGGugUGCCG---GCG- -5'
5974 5' -64.1 NC_001806.1 + 106898 0.66 0.572191
Target:  5'- cCCCcuCUCuucuGGCGCCUaACGgGGCUGCu -3'
miRNA:   3'- -GGGucGAGc---CCGCGGG-UGUgCCGGCG- -5'
5974 5' -64.1 NC_001806.1 + 93978 0.66 0.572191
Target:  5'- cUCCGGCcgCGguacagaucGGCGCCgCGagAUGGCCGCc -3'
miRNA:   3'- -GGGUCGa-GC---------CCGCGG-GUg-UGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.