miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5975 5' -55.2 NC_001806.1 + 99637 0.66 0.937461
Target:  5'- cAUGGGGGCGguGGcGGGccugGCGGGCaGGCa -3'
miRNA:   3'- -UGCUCCUGCuuCU-CCUa---CGCCUG-CUG- -5'
5975 5' -55.2 NC_001806.1 + 69126 0.66 0.937461
Target:  5'- cCGGGGACGcuaauGGcgcgcGUGCGGACgGACg -3'
miRNA:   3'- uGCUCCUGCuucu-CC-----UACGCCUG-CUG- -5'
5975 5' -55.2 NC_001806.1 + 25946 0.66 0.937461
Target:  5'- gUGGGGGCGggGccgcGGGA-GCGGGgGGa -3'
miRNA:   3'- uGCUCCUGCuuC----UCCUaCGCCUgCUg -5'
5975 5' -55.2 NC_001806.1 + 71915 0.66 0.937461
Target:  5'- uCGAGGGauguuugguCGAGGGGGGcgaGUGGACGcGCg -3'
miRNA:   3'- uGCUCCU---------GCUUCUCCUa--CGCCUGC-UG- -5'
5975 5' -55.2 NC_001806.1 + 64652 0.66 0.936977
Target:  5'- gUGAGG-CGAGGGGGGcugccgaauguccUGgGGGgGACa -3'
miRNA:   3'- uGCUCCuGCUUCUCCU-------------ACgCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 59884 0.66 0.932518
Target:  5'- -gGAcGGACGAGGAGGccagugacGUGGACGcCu -3'
miRNA:   3'- ugCU-CCUGCUUCUCCua------CGCCUGCuG- -5'
5975 5' -55.2 NC_001806.1 + 140432 0.66 0.932518
Target:  5'- gUGAGGGuggcaUGggGGGGggGCGGuuacuCGGCc -3'
miRNA:   3'- uGCUCCU-----GCuuCUCCuaCGCCu----GCUG- -5'
5975 5' -55.2 NC_001806.1 + 44510 0.66 0.927336
Target:  5'- uGCcGGGACGguGAccGGgcGaCGGACGACa -3'
miRNA:   3'- -UGcUCCUGCuuCU--CCuaC-GCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 66228 0.66 0.927336
Target:  5'- uUGGGGGCGGAGcguuGUGUGGGCGGg -3'
miRNA:   3'- uGCUCCUGCUUCucc-UACGCCUGCUg -5'
5975 5' -55.2 NC_001806.1 + 4586 0.66 0.921915
Target:  5'- nCGAGGACGAGGAcccGGAguccgacgagGUcGAUGACg -3'
miRNA:   3'- uGCUCCUGCUUCU---CCUa---------CGcCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 34004 0.66 0.921915
Target:  5'- gGCGGGGGCGugggcGGGGGUGCucgucGAuCGACc -3'
miRNA:   3'- -UGCUCCUGCuu---CUCCUACGc----CU-GCUG- -5'
5975 5' -55.2 NC_001806.1 + 20905 0.67 0.916256
Target:  5'- uACGcGGACGAAGcgcGGGAgGgGGAuCGGCc -3'
miRNA:   3'- -UGCuCCUGCUUC---UCCUaCgCCU-GCUG- -5'
5975 5' -55.2 NC_001806.1 + 5872 0.67 0.916256
Target:  5'- gACGccGGGACcAAcGGGAcgGCGGGCGGCc -3'
miRNA:   3'- -UGC--UCCUGcUUcUCCUa-CGCCUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 151196 0.67 0.910358
Target:  5'- -gGAGGGCGAGGc-GcgGCGGAaGGCg -3'
miRNA:   3'- ugCUCCUGCUUCucCuaCGCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 8610 0.67 0.910358
Target:  5'- uGCGGGGugAUGggGGGGAaGaGaGACGACa -3'
miRNA:   3'- -UGCUCC--UGCuuCUCCUaCgC-CUGCUG- -5'
5975 5' -55.2 NC_001806.1 + 20712 0.67 0.904224
Target:  5'- uCGGGGugGGcccgccGGGGGG-GCGGGgGGCc -3'
miRNA:   3'- uGCUCCugCU------UCUCCUaCGCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 11777 0.67 0.904224
Target:  5'- aGCGGGGAUGGuggucGAGGGaGCGGG-GAUg -3'
miRNA:   3'- -UGCUCCUGCUu----CUCCUaCGCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 77847 0.67 0.897856
Target:  5'- gGCGA-GAUGggGGgccucgauGGAUGCGG-CGGCc -3'
miRNA:   3'- -UGCUcCUGCuuCU--------CCUACGCCuGCUG- -5'
5975 5' -55.2 NC_001806.1 + 71405 0.67 0.897856
Target:  5'- uCGAGGACGAcGA-GAUGauccCGGAgGACa -3'
miRNA:   3'- uGCUCCUGCUuCUcCUAC----GCCUgCUG- -5'
5975 5' -55.2 NC_001806.1 + 29445 0.67 0.897856
Target:  5'- -gGAGGcCGAGGAGGccgucaggGCGGgcACGGCc -3'
miRNA:   3'- ugCUCCuGCUUCUCCua------CGCC--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.