miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 148391 0.66 0.849541
Target:  5'- --uCCGUGGuGGGCUccGGguGGGUgGGCg -3'
miRNA:   3'- gauGGUACC-UCCGG--UCguCUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 2222 0.66 0.849541
Target:  5'- -gGCCGUGuccGGCCcGCAcAGCCGGUu -3'
miRNA:   3'- gaUGGUACcu-CCGGuCGUcUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 3094 0.66 0.849541
Target:  5'- -gGCgGcGGcGGCC-GCGGAGCuCGGCa -3'
miRNA:   3'- gaUGgUaCCuCCGGuCGUCUCG-GUCG- -5'
5976 3' -57.4 NC_001806.1 + 37790 0.66 0.848745
Target:  5'- -gGCCGgggcgcGGGGGUCcGCGGGcgggggggcaaucGCCAGCg -3'
miRNA:   3'- gaUGGUa-----CCUCCGGuCGUCU-------------CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 135259 0.66 0.844734
Target:  5'- cCUACCcgGGGGGCCcgaAGCacugacucaaaguagGGGGCgacgaaugCGGCg -3'
miRNA:   3'- -GAUGGuaCCUCCGG---UCG---------------UCUCG--------GUCG- -5'
5976 3' -57.4 NC_001806.1 + 148148 0.66 0.841491
Target:  5'- -cGCCcgucacgGGGGGCgCGGCGGcGCCucuGCg -3'
miRNA:   3'- gaUGGua-----CCUCCG-GUCGUCuCGGu--CG- -5'
5976 3' -57.4 NC_001806.1 + 128529 0.66 0.841491
Target:  5'- -gGCCAUGcGGGCC-GCAGccagacggcGGCCcGCg -3'
miRNA:   3'- gaUGGUACcUCCGGuCGUC---------UCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 5100 0.66 0.841491
Target:  5'- -gGCCcgucgGUGG-GGCCcGgGGAGCCGGg -3'
miRNA:   3'- gaUGG-----UACCuCCGGuCgUCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 122777 0.66 0.841491
Target:  5'- gUACCAacucGGGGGCCAGgAauuCCAGCu -3'
miRNA:   3'- gAUGGUa---CCUCCGGUCgUcucGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 55243 0.66 0.833249
Target:  5'- aUACaacGGAgGGUCGGCGcccGGGCCGGCc -3'
miRNA:   3'- gAUGguaCCU-CCGGUCGU---CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 22562 0.66 0.833249
Target:  5'- -cGCUgacGGGGGCCGcGgGGAGCCccGGCg -3'
miRNA:   3'- gaUGGua-CCUCCGGU-CgUCUCGG--UCG- -5'
5976 3' -57.4 NC_001806.1 + 50509 0.66 0.833249
Target:  5'- --gUCGUGGGGGCCgAGCAcGAGgCgcugGGCg -3'
miRNA:   3'- gauGGUACCUCCGG-UCGU-CUCgG----UCG- -5'
5976 3' -57.4 NC_001806.1 + 147819 0.66 0.833249
Target:  5'- -cGCCGcgGGGGGCCuGUGGggagaGGCCGGg -3'
miRNA:   3'- gaUGGUa-CCUCCGGuCGUC-----UCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 4746 0.66 0.833249
Target:  5'- -gGCCGgggcccGGucGCCGGCGGcGUCGGCu -3'
miRNA:   3'- gaUGGUa-----CCucCGGUCGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 129701 0.66 0.833249
Target:  5'- -cGCCucuccGGAGGCCcGgGGGGCCAcGUu -3'
miRNA:   3'- gaUGGua---CCUCCGGuCgUCUCGGU-CG- -5'
5976 3' -57.4 NC_001806.1 + 134301 0.66 0.824823
Target:  5'- -gGCCGagagaacgGGGGGCgGGUuguuGGCCAGCa -3'
miRNA:   3'- gaUGGUa-------CCUCCGgUCGuc--UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 22875 0.66 0.824823
Target:  5'- -gGCCGUcccGGGGCUGGcCGGGGcCCGGCc -3'
miRNA:   3'- gaUGGUAc--CUCCGGUC-GUCUC-GGUCG- -5'
5976 3' -57.4 NC_001806.1 + 128709 0.66 0.824823
Target:  5'- -gGCCGUGGAGuucaccCCGGCAuaaGAGCUcgccuGGCg -3'
miRNA:   3'- gaUGGUACCUCc-----GGUCGU---CUCGG-----UCG- -5'
5976 3' -57.4 NC_001806.1 + 98928 0.66 0.819683
Target:  5'- uCUGCCAUGGAgcgcacggaacacaaGGCCAaGaagaAGGGCacgAGCg -3'
miRNA:   3'- -GAUGGUACCU---------------CCGGU-Cg---UCUCGg--UCG- -5'
5976 3' -57.4 NC_001806.1 + 2721 0.66 0.816222
Target:  5'- --cCCAgggGGucgGGGCCcucGGCGG-GCCGGCg -3'
miRNA:   3'- gauGGUa--CC---UCCGG---UCGUCuCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.