Results 21 - 40 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5976 | 3' | -57.4 | NC_001806.1 | + | 151276 | 0.71 | 0.559584 |
Target: 5'- -gGCgGUGGGGGCCggGGCcgGGGGgCGGCg -3' miRNA: 3'- gaUGgUACCUCCGG--UCG--UCUCgGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 41224 | 0.71 | 0.519741 |
Target: 5'- cCUAaaGUGGcccaGGGCCucGUGGAGCCGGCg -3' miRNA: 3'- -GAUggUACC----UCCGGu-CGUCUCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 30638 | 0.71 | 0.549533 |
Target: 5'- -gGCCggGGGGGCgCGGcCAGGGUgGGCc -3' miRNA: 3'- gaUGGuaCCUCCG-GUC-GUCUCGgUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 24883 | 0.71 | 0.539538 |
Target: 5'- -gGCCGUGGAGGUgcugggGGCGGAGgCgGGCu -3' miRNA: 3'- gaUGGUACCUCCGg-----UCGUCUC-GgUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 20724 | 0.7 | 0.590017 |
Target: 5'- -cGCCG-GGGGGgCGG-GGGGCCGGCg -3' miRNA: 3'- gaUGGUaCCUCCgGUCgUCUCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 24139 | 0.7 | 0.583902 |
Target: 5'- -gGCCGUGGAGuuucuggggcugcucGCCAGC---GCCGGCg -3' miRNA: 3'- gaUGGUACCUC---------------CGGUCGucuCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 66426 | 0.7 | 0.619699 |
Target: 5'- gUGCgGUGGGGcGCCcccGCAGGuccggcuGCCAGCg -3' miRNA: 3'- gAUGgUACCUC-CGGu--CGUCU-------CGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 51609 | 0.7 | 0.630989 |
Target: 5'- gCUGCCc-GGcGGCCAGUuGAGCCGcGCc -3' miRNA: 3'- -GAUGGuaCCuCCGGUCGuCUCGGU-CG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 85981 | 0.7 | 0.630989 |
Target: 5'- cCU-CCcgGGGGGUCGGCAG-GCgaCGGCg -3' miRNA: 3'- -GAuGGuaCCUCCGGUCGUCuCG--GUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 70643 | 0.7 | 0.579833 |
Target: 5'- -cACC-UGGGGGUguGCGacGAGCUGGCg -3' miRNA: 3'- gaUGGuACCUCCGguCGU--CUCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 84433 | 0.7 | 0.630989 |
Target: 5'- -aGCCcgGGgacggGGGCCGGUuuguGAGCCuGCu -3' miRNA: 3'- gaUGGuaCC-----UCCGGUCGu---CUCGGuCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 57022 | 0.7 | 0.61047 |
Target: 5'- gUGCCAggcacugGGuGGCCGGgccCGGGGCCGGg -3' miRNA: 3'- gAUGGUa------CCuCCGGUC---GUCUCGGUCg -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 20329 | 0.69 | 0.651511 |
Target: 5'- -gGCCAaugGGGGGgCGGCAaGGCgGGCg -3' miRNA: 3'- gaUGGUa--CCUCCgGUCGUcUCGgUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 136394 | 0.69 | 0.682155 |
Target: 5'- -gACCGUGGccaGCUGGCGG-GUCAGCg -3' miRNA: 3'- gaUGGUACCuc-CGGUCGUCuCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 139816 | 0.69 | 0.682155 |
Target: 5'- -gAUCAUGGuacgGGGCCGGgAGcGCCAGg -3' miRNA: 3'- gaUGGUACC----UCCGGUCgUCuCGGUCg -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 132616 | 0.69 | 0.682155 |
Target: 5'- -cACCGUGccGGCCacGGCcGAGUCGGCa -3' miRNA: 3'- gaUGGUACcuCCGG--UCGuCUCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 1414 | 0.69 | 0.641254 |
Target: 5'- --cCCGUGGccgAGGCCcagcgaaucccgGGCGGcGCCGGCg -3' miRNA: 3'- gauGGUACC---UCCGG------------UCGUCuCGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 58069 | 0.69 | 0.661753 |
Target: 5'- -gGCCcgGGAGGCCgAGCuc--CCGGCu -3' miRNA: 3'- gaUGGuaCCUCCGG-UCGucucGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 2988 | 0.69 | 0.661753 |
Target: 5'- -gGCgCggGGAGGCggCGGCGGccGCCAGCg -3' miRNA: 3'- gaUG-GuaCCUCCG--GUCGUCu-CGGUCG- -5' |
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5976 | 3' | -57.4 | NC_001806.1 | + | 46384 | 0.69 | 0.682155 |
Target: 5'- -cGCCAUGGAccccCCGGguG-GCCGGCu -3' miRNA: 3'- gaUGGUACCUcc--GGUCguCuCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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