miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 5' -65.4 NC_001806.1 + 112259 0.66 0.546671
Target:  5'- -gGGUGgCCCgGGCGaCCcuggUCGCCGaGCu -3'
miRNA:   3'- ugCCGCaGGGgCCGCaGG----AGCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 79399 0.66 0.546671
Target:  5'- cCGGCGgCCCCGcGCcccUCCUUGCCccGGa -3'
miRNA:   3'- uGCCGCaGGGGC-CGc--AGGAGCGG--CCg -5'
5976 5' -65.4 NC_001806.1 + 33760 0.66 0.546671
Target:  5'- gGCGGCGgCUgCGGCGgCUgCGgCGGCc -3'
miRNA:   3'- -UGCCGCaGGgGCCGCaGGaGCgGCCG- -5'
5976 5' -65.4 NC_001806.1 + 23216 0.66 0.546671
Target:  5'- gGCGGCGgCCagcgcaCCGGaCGccgCCgacgCGCUGGCg -3'
miRNA:   3'- -UGCCGCaGG------GGCC-GCa--GGa---GCGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 134746 0.66 0.546671
Target:  5'- -aGGCGUCCUCGGgacuccCGUCCagaaCGaaccgcaaCCGGCa -3'
miRNA:   3'- ugCCGCAGGGGCC------GCAGGa---GC--------GGCCG- -5'
5976 5' -65.4 NC_001806.1 + 49127 0.66 0.544818
Target:  5'- -aGGCGcgcauccacccgCCCCcGCG-CCUCGCCcguGGCg -3'
miRNA:   3'- ugCCGCa-----------GGGGcCGCaGGAGCGG---CCG- -5'
5976 5' -65.4 NC_001806.1 + 6081 0.66 0.544818
Target:  5'- -gGGCGggCCCgGGCGgcggggggcgggUCUCuCCGGCg -3'
miRNA:   3'- ugCCGCa-GGGgCCGCa-----------GGAGcGGCCG- -5'
5976 5' -65.4 NC_001806.1 + 92601 0.66 0.537428
Target:  5'- aACGGCaaGcCCCCGGgGUCCaaccaGCCGa- -3'
miRNA:   3'- -UGCCG--CaGGGGCCgCAGGag---CGGCcg -5'
5976 5' -65.4 NC_001806.1 + 147301 0.66 0.537428
Target:  5'- -gGGgGUCCCgGGCccacCCUgGCCGcGCc -3'
miRNA:   3'- ugCCgCAGGGgCCGca--GGAgCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 4678 0.66 0.537428
Target:  5'- cGCGGCGacaggcggUCCgUGGgGUCCggauacgCGCCGcGUa -3'
miRNA:   3'- -UGCCGC--------AGGgGCCgCAGGa------GCGGC-CG- -5'
5976 5' -65.4 NC_001806.1 + 94172 0.66 0.537428
Target:  5'- -gGGCG-CUgCGGCGUCgUCugagGCCGGg -3'
miRNA:   3'- ugCCGCaGGgGCCGCAGgAG----CGGCCg -5'
5976 5' -65.4 NC_001806.1 + 86655 0.66 0.537428
Target:  5'- cACGGcCGUCagCCCGGCGgCCgugagGCCgcGGCa -3'
miRNA:   3'- -UGCC-GCAG--GGGCCGCaGGag---CGG--CCG- -5'
5976 5' -65.4 NC_001806.1 + 99523 0.66 0.537428
Target:  5'- cUGGCGUugacaagggCCCCGGCcUCCgCGuuGGa -3'
miRNA:   3'- uGCCGCA---------GGGGCCGcAGGaGCggCCg -5'
5976 5' -65.4 NC_001806.1 + 79077 0.66 0.528239
Target:  5'- gGCGGCGa----GGaCGUCCUCGCCGccaGCg -3'
miRNA:   3'- -UGCCGCaggggCC-GCAGGAGCGGC---CG- -5'
5976 5' -65.4 NC_001806.1 + 68586 0.66 0.528239
Target:  5'- cGCGGCGgCCCUGgggccgguccGCGUCCgccagugCGCCGuGg -3'
miRNA:   3'- -UGCCGCaGGGGC----------CGCAGGa------GCGGC-Cg -5'
5976 5' -65.4 NC_001806.1 + 52522 0.66 0.528239
Target:  5'- uGCGGC--UCgUGGCGU-CUCGCCGGa -3'
miRNA:   3'- -UGCCGcaGGgGCCGCAgGAGCGGCCg -5'
5976 5' -65.4 NC_001806.1 + 38394 0.66 0.519108
Target:  5'- cGCGGCGgcucUCCgCCGGCucggggggGUCCUCGUCc-- -3'
miRNA:   3'- -UGCCGC----AGG-GGCCG--------CAGGAGCGGccg -5'
5976 5' -65.4 NC_001806.1 + 134837 0.66 0.519108
Target:  5'- cUGGCGgucgccgaCCUGGCGcaCCUCGCaGGCc -3'
miRNA:   3'- uGCCGCag------GGGCCGCa-GGAGCGgCCG- -5'
5976 5' -65.4 NC_001806.1 + 69898 0.66 0.518199
Target:  5'- cGCGGCGacccagauccgcuUCCCCgcccucgagGGCauucaccccaacGUCCUCGCCGa- -3'
miRNA:   3'- -UGCCGC-------------AGGGG---------CCG------------CAGGAGCGGCcg -5'
5976 5' -65.4 NC_001806.1 + 140027 0.66 0.510041
Target:  5'- cGCGGCGaaagcgCCCgGaGCG-CCacgGCCGGCa -3'
miRNA:   3'- -UGCCGCa-----GGGgC-CGCaGGag-CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.