miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5977 5' -61.3 NC_001806.1 + 136180 0.66 0.742563
Target:  5'- cGGGCGAaucgaaGACCagACGGuCCCCGGuCcACa -3'
miRNA:   3'- -CCCGCU------CUGGg-UGCCuGGGGCU-GcUG- -5'
5977 5' -61.3 NC_001806.1 + 150666 0.66 0.742563
Target:  5'- uGGCcGGGCCCcgccgcgcugGCGG-CCgCCGAUGGCc -3'
miRNA:   3'- cCCGcUCUGGG----------UGCCuGG-GGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 131877 0.66 0.742563
Target:  5'- uGGCGGccGCCCGC--GCCgCGACGACg -3'
miRNA:   3'- cCCGCUc-UGGGUGccUGGgGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 113849 0.66 0.742563
Target:  5'- cGGcGCGcGGCCC-UGGACCgCCaucGCGACu -3'
miRNA:   3'- -CC-CGCuCUGGGuGCCUGG-GGc--UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 50013 0.66 0.742563
Target:  5'- -cGCgGAGGCgCGCGGgucugACCUgGACGACa -3'
miRNA:   3'- ccCG-CUCUGgGUGCC-----UGGGgCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 48306 0.66 0.742563
Target:  5'- aGGCGGGGCUgGCGG-CUCCG-CGcCu -3'
miRNA:   3'- cCCGCUCUGGgUGCCuGGGGCuGCuG- -5'
5977 5' -61.3 NC_001806.1 + 17048 0.66 0.742563
Target:  5'- --aCGAGcACCCcgaacgACGGGCCCCGggguuuuaaggaGCGGCa -3'
miRNA:   3'- cccGCUC-UGGG------UGCCUGGGGC------------UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 150095 0.66 0.742563
Target:  5'- aGGC-AGGCCCaccGCGGGgcggccccguCCCCGGgGACc -3'
miRNA:   3'- cCCGcUCUGGG---UGCCU----------GGGGCUgCUG- -5'
5977 5' -61.3 NC_001806.1 + 68669 0.66 0.742563
Target:  5'- uGGCcauGAG-CCCGCGGACCUCcauCGAg -3'
miRNA:   3'- cCCG---CUCuGGGUGCCUGGGGcu-GCUg -5'
5977 5' -61.3 NC_001806.1 + 151236 0.66 0.739788
Target:  5'- gGGGUGGGAggggucagccccgcCCCcCGGGCCCaCGcCGGg -3'
miRNA:   3'- -CCCGCUCU--------------GGGuGCCUGGG-GCuGCUg -5'
5977 5' -61.3 NC_001806.1 + 83289 0.66 0.738861
Target:  5'- cGGGCGcggaGGACCCcgcaacccgccccCGGAuCCCUGugGGg -3'
miRNA:   3'- -CCCGC----UCUGGGu------------GCCU-GGGGCugCUg -5'
5977 5' -61.3 NC_001806.1 + 40558 0.66 0.736077
Target:  5'- uGGGCGGGGCgugaaaauggaagcgCCGCGggucggcGugCgCGGCGACa -3'
miRNA:   3'- -CCCGCUCUG---------------GGUGC-------CugGgGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 109154 0.66 0.733285
Target:  5'- cGGGUGAGGCCagagucggCGCGGggcuccuccaGCgCCCGgucuGCGGCa -3'
miRNA:   3'- -CCCGCUCUGG--------GUGCC----------UG-GGGC----UGCUG- -5'
5977 5' -61.3 NC_001806.1 + 21979 0.66 0.733285
Target:  5'- cGGGuCGAGcuggacGCCgACGcGACCuCCGGCGcCu -3'
miRNA:   3'- -CCC-GCUC------UGGgUGC-CUGG-GGCUGCuG- -5'
5977 5' -61.3 NC_001806.1 + 7704 0.66 0.733285
Target:  5'- uGGUGAuguuGCCCGCGGACCaCCGGg--- -3'
miRNA:   3'- cCCGCUc---UGGGUGCCUGG-GGCUgcug -5'
5977 5' -61.3 NC_001806.1 + 113082 0.66 0.733285
Target:  5'- gGGGCGuacguggcGGCCC-CGGccgGCCCCGccGCaGACa -3'
miRNA:   3'- -CCCGCu-------CUGGGuGCC---UGGGGC--UG-CUG- -5'
5977 5' -61.3 NC_001806.1 + 74340 0.66 0.733285
Target:  5'- -aGCGGGGCCagaCGCuGGAcgcCCCCGAgGACc -3'
miRNA:   3'- ccCGCUCUGG---GUG-CCU---GGGGCUgCUG- -5'
5977 5' -61.3 NC_001806.1 + 57166 0.66 0.733285
Target:  5'- gGGGUGcGcgcauaaaGCCCagcACGGcGCaCCCGACGGCg -3'
miRNA:   3'- -CCCGCuC--------UGGG---UGCC-UG-GGGCUGCUG- -5'
5977 5' -61.3 NC_001806.1 + 51026 0.66 0.733285
Target:  5'- cGGCGgguccguguuGGGCCCGCGGGUCCgcgugGugGACa -3'
miRNA:   3'- cCCGC----------UCUGGGUGCCUGGGg----CugCUG- -5'
5977 5' -61.3 NC_001806.1 + 50784 0.66 0.733285
Target:  5'- cGG-GGGAUUCACGGcCCCCgagGugGGCa -3'
miRNA:   3'- cCCgCUCUGGGUGCCuGGGG---CugCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.