miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5979 3' -68.3 NC_001806.1 + 83328 0.66 0.412776
Target:  5'- uGGGGaGGGGCuuuuggacaCCGGGCCCU--UUUCc -3'
miRNA:   3'- cCCCCgCCCCG---------GGCCCGGGGcuGAAG- -5'
5979 3' -68.3 NC_001806.1 + 34398 0.66 0.412776
Target:  5'- uGGGcGGCGGuGGCcgggCCGGGCCgggCCGGg--- -3'
miRNA:   3'- -CCC-CCGCC-CCG----GGCCCGG---GGCUgaag -5'
5979 3' -68.3 NC_001806.1 + 18317 0.66 0.412776
Target:  5'- aGGGGGuCGGGGCgaCCGGaCUCaCGGCc-- -3'
miRNA:   3'- -CCCCC-GCCCCG--GGCCcGGG-GCUGaag -5'
5979 3' -68.3 NC_001806.1 + 128987 0.66 0.412776
Target:  5'- cGGGGGgGauuuGGCCgaaugGGuGCCCCGGgUUCa -3'
miRNA:   3'- -CCCCCgCc---CCGGg----CC-CGGGGCUgAAG- -5'
5979 3' -68.3 NC_001806.1 + 33652 0.66 0.412776
Target:  5'- gGGGGGgGGGuGUCgCGGGCCgucugCUGGCc-- -3'
miRNA:   3'- -CCCCCgCCC-CGG-GCCCGG-----GGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 28668 0.66 0.410385
Target:  5'- gGGGGGUGGGgaggagccGCCCgccauauuuGGGggacgccgugggacCCCCGACUcCg -3'
miRNA:   3'- -CCCCCGCCC--------CGGG---------CCC--------------GGGGCUGAaG- -5'
5979 3' -68.3 NC_001806.1 + 115067 0.66 0.400124
Target:  5'- cGGucguGGCGGGaaaccGCCUGGGgccggcccagcccguCCCCGugUUCg -3'
miRNA:   3'- -CCc---CCGCCC-----CGGGCCC---------------GGGGCugAAG- -5'
5979 3' -68.3 NC_001806.1 + 33113 0.66 0.397
Target:  5'- cGGGuccGGaCGGGGCCCGGaCCgCCGcggUCg -3'
miRNA:   3'- -CCC---CC-GCCCCGGGCCcGG-GGCugaAG- -5'
5979 3' -68.3 NC_001806.1 + 147797 0.66 0.397
Target:  5'- gGGGGGCGGaGCCUggcauGGGCgCCG-Cg-- -3'
miRNA:   3'- -CCCCCGCCcCGGG-----CCCGgGGCuGaag -5'
5979 3' -68.3 NC_001806.1 + 4379 0.66 0.394667
Target:  5'- cGGGGGUccucgccgccgcccGGGGCuuGGGCg-CGGCcUCg -3'
miRNA:   3'- -CCCCCG--------------CCCCGggCCCGggGCUGaAG- -5'
5979 3' -68.3 NC_001806.1 + 113416 0.66 0.388489
Target:  5'- uGGGGGUGGGacgccacGCCauGGCCCCcGCc-- -3'
miRNA:   3'- -CCCCCGCCC-------CGGgcCCGGGGcUGaag -5'
5979 3' -68.3 NC_001806.1 + 94538 0.66 0.381616
Target:  5'- uGGGGGCGguGGGgUCGGGCcuuaucgucccCCCGgaGCUUa -3'
miRNA:   3'- -CCCCCGC--CCCgGGCCCG-----------GGGC--UGAAg -5'
5979 3' -68.3 NC_001806.1 + 22082 0.66 0.381616
Target:  5'- cGGGGCGGGugcuguacggcgGCCUGGGCgacagccgCCCgGGCcUCu -3'
miRNA:   3'- cCCCCGCCC------------CGGGCCCG--------GGG-CUGaAG- -5'
5979 3' -68.3 NC_001806.1 + 24986 0.66 0.381616
Target:  5'- aGGGGGaCGGGGUgcuguaaCGGGCCggGACg-- -3'
miRNA:   3'- -CCCCC-GCCCCGg------GCCCGGggCUGaag -5'
5979 3' -68.3 NC_001806.1 + 40862 0.66 0.379343
Target:  5'- cGGGGCGGGGa-CGGGCaugcacacccgcagUCCGAuCUUg -3'
miRNA:   3'- cCCCCGCCCCggGCCCG--------------GGGCU-GAAg -5'
5979 3' -68.3 NC_001806.1 + 80247 0.66 0.374075
Target:  5'- uGGaGGGCGGuguugcGCCCGGaGgCCCGGUUUCc -3'
miRNA:   3'- -CC-CCCGCCc-----CGGGCC-CgGGGCUGAAG- -5'
5979 3' -68.3 NC_001806.1 + 2764 0.66 0.374075
Target:  5'- cGGGGCGcgggcGGGCCUGcGCCgCGGCg-- -3'
miRNA:   3'- cCCCCGC-----CCCGGGCcCGGgGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 27346 0.66 0.371832
Target:  5'- -uGGGCGGGaGUuaccgcccaaugggCCGGGCCgCCcACUUCc -3'
miRNA:   3'- ccCCCGCCC-CG--------------GGCCCGG-GGcUGAAG- -5'
5979 3' -68.3 NC_001806.1 + 6098 0.66 0.366635
Target:  5'- nGGGGGCGGGucucUCCGGcGCacauaaaggCCCGGCg-- -3'
miRNA:   3'- -CCCCCGCCCc---GGGCC-CG---------GGGCUGaag -5'
5979 3' -68.3 NC_001806.1 + 105718 0.67 0.36222
Target:  5'- cGGGGCGGcaagcccugccauaGCCaCGGGCCCCGu---- -3'
miRNA:   3'- cCCCCGCCc-------------CGG-GCCCGGGGCugaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.