miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5981 3' -64.5 NC_001806.1 + 30901 0.66 0.546574
Target:  5'- cACGCGgagacuuccGGGGcCGUcCCCgCGGGcGGCCu -3'
miRNA:   3'- uUGUGU---------CCCCuGCGuGGG-GCCC-CCGG- -5'
5981 3' -64.5 NC_001806.1 + 115543 0.66 0.546574
Target:  5'- -gUACAGuuuaaGCGCcCCCCGGGGuGCCg -3'
miRNA:   3'- uuGUGUCccc--UGCGuGGGGCCCC-CGG- -5'
5981 3' -64.5 NC_001806.1 + 51752 0.66 0.546574
Target:  5'- uGGCGCcaaagcugcuGGcGCGCACCCCGuucaagagcGGGGCCg -3'
miRNA:   3'- -UUGUGuc--------CCcUGCGUGGGGC---------CCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 136361 0.66 0.545628
Target:  5'- aAACcCGGGGccGGCGCGCUCCGcGGccuccgcgaccguGGCCa -3'
miRNA:   3'- -UUGuGUCCC--CUGCGUGGGGC-CC-------------CCGG- -5'
5981 3' -64.5 NC_001806.1 + 119288 0.66 0.537139
Target:  5'- cACGCGGGGGcgccCGCAgaCCCGcccaucgucGGGGCg -3'
miRNA:   3'- uUGUGUCCCCu---GCGUg-GGGC---------CCCCGg -5'
5981 3' -64.5 NC_001806.1 + 106865 0.66 0.537139
Target:  5'- ---uCGGGGGACGCggGCgCCGagcaGGGCCc -3'
miRNA:   3'- uuguGUCCCCUGCG--UGgGGCc---CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 64941 0.66 0.537139
Target:  5'- cGCugAGGGaccaccggcgucGGCGC-CCgggCCGGGGGUCc -3'
miRNA:   3'- uUGugUCCC------------CUGCGuGG---GGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 47206 0.66 0.537139
Target:  5'- cGGC-CGGGGGuCccaaaaaCACCCCGGcGGCCc -3'
miRNA:   3'- -UUGuGUCCCCuGc------GUGGGGCCcCCGG- -5'
5981 3' -64.5 NC_001806.1 + 101086 0.66 0.536199
Target:  5'- cACGCAGGcGAUcaGCcccacaaaaaacgGCCCgCGGGGGUCg -3'
miRNA:   3'- uUGUGUCCcCUG--CG-------------UGGG-GCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 64843 0.66 0.530568
Target:  5'- uGGC-CGGGGGuccgaaagccccuccGCGCGUCCCGGGccacggcgggaucGGCCg -3'
miRNA:   3'- -UUGuGUCCCC---------------UGCGUGGGGCCC-------------CCGG- -5'
5981 3' -64.5 NC_001806.1 + 46379 0.66 0.527761
Target:  5'- cGACGCGccauGGAC-C-CCCCGGGuGGCCg -3'
miRNA:   3'- -UUGUGUcc--CCUGcGuGGGGCCC-CCGG- -5'
5981 3' -64.5 NC_001806.1 + 151225 0.66 0.527761
Target:  5'- gGGCGCgAGGGGGgGUgggaggggucaGCCCCGccccccGGGCCc -3'
miRNA:   3'- -UUGUG-UCCCCUgCG-----------UGGGGCc-----CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 131778 0.66 0.527761
Target:  5'- -cCGCAGGGGagggucgcGCGCGCUuuGcGGaGGUCu -3'
miRNA:   3'- uuGUGUCCCC--------UGCGUGGggC-CC-CCGG- -5'
5981 3' -64.5 NC_001806.1 + 2281 0.66 0.527761
Target:  5'- cGCGCucGGcGGAC-CACUCCGGcGGCCc -3'
miRNA:   3'- uUGUGu-CC-CCUGcGUGGGGCCcCCGG- -5'
5981 3' -64.5 NC_001806.1 + 32988 0.66 0.527761
Target:  5'- gGGCccCGGGccGGGC-CGCCaCGGGGGCCg -3'
miRNA:   3'- -UUGu-GUCC--CCUGcGUGGgGCCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 105132 0.66 0.526826
Target:  5'- gGACAgCuuucGGGGGCGgccgugcCGCCCCaGGGuGCCg -3'
miRNA:   3'- -UUGU-Gu---CCCCUGC-------GUGGGGcCCC-CGG- -5'
5981 3' -64.5 NC_001806.1 + 33314 0.66 0.522163
Target:  5'- cGGCGCuuaGGGGGAggauguCGCcgacgccccuuggccGCCCCggcugcagGGGGGCCc -3'
miRNA:   3'- -UUGUG---UCCCCU------GCG---------------UGGGG--------CCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 25422 0.66 0.518444
Target:  5'- gGGCGguGGuggugcgcGGGCGC-CCCCGGaGGGUUu -3'
miRNA:   3'- -UUGUguCC--------CCUGCGuGGGGCC-CCCGG- -5'
5981 3' -64.5 NC_001806.1 + 144975 0.66 0.518444
Target:  5'- cGGCcCGGGGccccGGCGgACCCaaGGGGCCc -3'
miRNA:   3'- -UUGuGUCCC----CUGCgUGGGgcCCCCGG- -5'
5981 3' -64.5 NC_001806.1 + 109540 0.66 0.518444
Target:  5'- gAGC-CGGGGGAggUGCGCCUgGGccaGGGCg -3'
miRNA:   3'- -UUGuGUCCCCU--GCGUGGGgCC---CCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.