miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5982 5' -51.3 NC_001806.1 + 83967 0.66 0.992749
Target:  5'- gAAUUCGAGACGGuCGcCGGGgaccgCGAgCCg -3'
miRNA:   3'- -UUAGGCUCUGUC-GUaGCCUaa---GCU-GG- -5'
5982 5' -51.3 NC_001806.1 + 35499 0.66 0.989112
Target:  5'- -cUCCGgagaGGGCgaGGCGUCGGAgcggGGCCg -3'
miRNA:   3'- uuAGGC----UCUG--UCGUAGCCUaag-CUGG- -5'
5982 5' -51.3 NC_001806.1 + 9576 0.66 0.98897
Target:  5'- uGUCCGAGcuccaguccgcguACAGC-UCGcugUCGGCCa -3'
miRNA:   3'- uUAGGCUC-------------UGUCGuAGCcuaAGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 52589 0.66 0.98747
Target:  5'- --cCCGGGGgGGCAUCgcgcgggGGGUggGACCu -3'
miRNA:   3'- uuaGGCUCUgUCGUAG-------CCUAagCUGG- -5'
5982 5' -51.3 NC_001806.1 + 65183 0.67 0.98599
Target:  5'- cGUCCGAGACGaacuCcgCGGGgcCGACUg -3'
miRNA:   3'- uUAGGCUCUGUc---GuaGCCUaaGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 144616 0.67 0.98599
Target:  5'- --gCCGGGGCGGCcaaGGGgcgUCGGCg -3'
miRNA:   3'- uuaGGCUCUGUCGuagCCUa--AGCUGg -5'
5982 5' -51.3 NC_001806.1 + 6221 0.67 0.984192
Target:  5'- cGUCgGAgcgGACGGCGUCGGcAUcgCGACg -3'
miRNA:   3'- uUAGgCU---CUGUCGUAGCC-UAa-GCUGg -5'
5982 5' -51.3 NC_001806.1 + 76925 0.67 0.984192
Target:  5'- --gCCGAGGCggagugggacgaGGUAUgGGGUcgcuUCGGCCg -3'
miRNA:   3'- uuaGGCUCUG------------UCGUAgCCUA----AGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 39729 0.67 0.982224
Target:  5'- uGAUCCGAcGAUucauGGCGUCaGGUggGACCu -3'
miRNA:   3'- -UUAGGCU-CUG----UCGUAGcCUAagCUGG- -5'
5982 5' -51.3 NC_001806.1 + 95068 0.67 0.980077
Target:  5'- uGUUCG-GGCGGCGggCGGAgcauUUCGAUCg -3'
miRNA:   3'- uUAGGCuCUGUCGUa-GCCU----AAGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 120333 0.67 0.977743
Target:  5'- cGGUCgGGGGCGGCGggucgucccgcUCGGcgaCGACCu -3'
miRNA:   3'- -UUAGgCUCUGUCGU-----------AGCCuaaGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 57935 0.67 0.977743
Target:  5'- --gUCGAcGACGGCAUCGGAca-GGCa -3'
miRNA:   3'- uuaGGCU-CUGUCGUAGCCUaagCUGg -5'
5982 5' -51.3 NC_001806.1 + 38510 0.67 0.977743
Target:  5'- --gUCGGGGCuggGGUGUCGGAUaUGGCCu -3'
miRNA:   3'- uuaGGCUCUG---UCGUAGCCUAaGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 55454 0.67 0.977743
Target:  5'- -uUCCGAaacCGGCAUCGGAUcUGcACCc -3'
miRNA:   3'- uuAGGCUcu-GUCGUAGCCUAaGC-UGG- -5'
5982 5' -51.3 NC_001806.1 + 49661 0.67 0.977743
Target:  5'- -cUCCG-GGCGGCAuucccgUUGGAU-CGACUg -3'
miRNA:   3'- uuAGGCuCUGUCGU------AGCCUAaGCUGG- -5'
5982 5' -51.3 NC_001806.1 + 3504 0.68 0.975213
Target:  5'- cGUCgGcguggcGGGCGGCGUCGGggUCGucGCCc -3'
miRNA:   3'- uUAGgC------UCUGUCGUAGCCuaAGC--UGG- -5'
5982 5' -51.3 NC_001806.1 + 3086 0.68 0.969535
Target:  5'- aGGUCCGcGGCGGCGgcggccgCGGAgcUCGGCa -3'
miRNA:   3'- -UUAGGCuCUGUCGUa------GCCUa-AGCUGg -5'
5982 5' -51.3 NC_001806.1 + 30523 0.68 0.966372
Target:  5'- cGUCCGAGGaagaGGCG-CGGGUcgGGCCa -3'
miRNA:   3'- uUAGGCUCUg---UCGUaGCCUAagCUGG- -5'
5982 5' -51.3 NC_001806.1 + 81950 0.69 0.959366
Target:  5'- --cCCGGGACcGC--CGGGUUCGGCg -3'
miRNA:   3'- uuaGGCUCUGuCGuaGCCUAAGCUGg -5'
5982 5' -51.3 NC_001806.1 + 21624 0.69 0.959366
Target:  5'- --gCCGGuGGCGGcCAUCGGcGUcaUCGACCu -3'
miRNA:   3'- uuaGGCU-CUGUC-GUAGCC-UA--AGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.