miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 5' -65.9 NC_001806.1 + 30248 0.66 0.508418
Target:  5'- uGCGaGCgCCGCCU--CCGGGGcccGGCCCc -3'
miRNA:   3'- -UGUcUG-GGCGGAagGGCCCCc--CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 23695 0.66 0.508418
Target:  5'- cGCGGGCCCugGCCUcgaUCgCCGcGcGGugcgccGGGCCCg -3'
miRNA:   3'- -UGUCUGGG--CGGA---AG-GGC-C-CC------CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 64947 0.66 0.508418
Target:  5'- -gGGACCaccggCGUCggcgCCCGGgccGGGGGUCCc -3'
miRNA:   3'- ugUCUGG-----GCGGaa--GGGCC---CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 30724 0.66 0.508418
Target:  5'- uCGGcCCCGaCC--CCCGcGGGGGCCg -3'
miRNA:   3'- uGUCuGGGC-GGaaGGGCcCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 2271 0.66 0.508418
Target:  5'- gACAG-CCCGCCgcgCUCGGcGGaccacuccggcGGCCCc -3'
miRNA:   3'- -UGUCuGGGCGGaa-GGGCCcCC-----------CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 32941 0.66 0.508418
Target:  5'- cGCcGGgCCGUUguggggcCCCGGGccGGGGCCCc -3'
miRNA:   3'- -UGuCUgGGCGGaa-----GGGCCC--CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 39193 0.66 0.499394
Target:  5'- gGCGGcCuuGUCUgcguUCuuGGGGgccGGGCCCc -3'
miRNA:   3'- -UGUCuGggCGGA----AGggCCCC---CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 26956 0.66 0.499394
Target:  5'- uCGGccGCCCGCCUggcgCgCCGcGGcucguGGGCCCg -3'
miRNA:   3'- uGUC--UGGGCGGAa---G-GGC-CCc----CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 4929 0.66 0.490443
Target:  5'- gGCGucCUCGCCggcgucggugCCCGccgcGGGGGCCCu -3'
miRNA:   3'- -UGUcuGGGCGGaa--------GGGCc---CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 132832 0.66 0.490443
Target:  5'- uUAGACCCGCC--CgCGGccgucGGGCCCg -3'
miRNA:   3'- uGUCUGGGCGGaaGgGCCcc---CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 149821 0.66 0.490443
Target:  5'- gGCGGguACUCGC--UCCgGGGcGGGGCuCCa -3'
miRNA:   3'- -UGUC--UGGGCGgaAGGgCCC-CCCCG-GG- -5'
5984 5' -65.9 NC_001806.1 + 84416 0.66 0.481567
Target:  5'- gGCuGACCCcgagacGCag-CCCGGggacGGGGGCCg -3'
miRNA:   3'- -UGuCUGGG------CGgaaGGGCC----CCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 70499 0.66 0.481567
Target:  5'- gACAcGCCCGaCCg-CCUGGGGcccuGGCCCc -3'
miRNA:   3'- -UGUcUGGGC-GGaaGGGCCCCc---CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 32977 0.66 0.480683
Target:  5'- -uGGGUCCGCCggggcCCCGGgccgggccgccacGGGGGCCg -3'
miRNA:   3'- ugUCUGGGCGGaa---GGGCC-------------CCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 6306 0.66 0.476278
Target:  5'- -aAGACCCGCCcaCCCcacccacgaaacacaGGggacgcaccccGGGGGCCUc -3'
miRNA:   3'- ugUCUGGGCGGaaGGG---------------CC-----------CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 106676 0.66 0.472769
Target:  5'- cGCGGAcgaaaacccCCCGggggcUCUUCCCGGgcccccGGGcGGCCCc -3'
miRNA:   3'- -UGUCU---------GGGC-----GGAAGGGCC------CCC-CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 23086 0.66 0.472769
Target:  5'- uGCGcGCCgugaGCCUggUCgCCGGGGcccuGGGCCCc -3'
miRNA:   3'- -UGUcUGGg---CGGA--AG-GGCCCC----CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 110193 0.66 0.472769
Target:  5'- cGCGGACUCGuCCUcgugcgugCCgcacgCGGuGGGGGCCg -3'
miRNA:   3'- -UGUCUGGGC-GGAa-------GG-----GCC-CCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 21490 0.66 0.472769
Target:  5'- aGCcGACgCCGCCggcgaCCGGGccccggcccGGGGCCg -3'
miRNA:   3'- -UGuCUG-GGCGGaag--GGCCC---------CCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 2925 0.66 0.472769
Target:  5'- cGCGGGCcgCCGCC-UCCgGGcGGccGGGCCg -3'
miRNA:   3'- -UGUCUG--GGCGGaAGGgCC-CC--CCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.