miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5984 5' -65.9 NC_001806.1 + 142221 0.7 0.26622
Target:  5'- uGCAGGCCCGCUUcaucgUCCGGcGgcagaaccGGGGUCCg -3'
miRNA:   3'- -UGUCUGGGCGGAa----GGGCC-C--------CCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 139111 0.68 0.359262
Target:  5'- uGCuGACCgGCUcgCCgCGcGGGGGGCUg -3'
miRNA:   3'- -UGuCUGGgCGGaaGG-GC-CCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 135249 0.79 0.066417
Target:  5'- gAUGGGCgCGCCUaCCC-GGGGGGCCCg -3'
miRNA:   3'- -UGUCUGgGCGGAaGGGcCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 132832 0.66 0.490443
Target:  5'- uUAGACCCGCC--CgCGGccgucGGGCCCg -3'
miRNA:   3'- uGUCUGGGCGGaaGgGCCcc---CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 132659 0.7 0.278219
Target:  5'- -gGGGCCgcggccgcuuaCGCCgcgcUCCUGGGGGccuGGCCCg -3'
miRNA:   3'- ugUCUGG-----------GCGGa---AGGGCCCCC---CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 132541 0.73 0.183977
Target:  5'- -gGGGCCCGaguuugaggUCCGGGGGGGaCCCg -3'
miRNA:   3'- ugUCUGGGCggaa-----GGGCCCCCCC-GGG- -5'
5984 5' -65.9 NC_001806.1 + 132493 0.72 0.222382
Target:  5'- cACGGuCCaCGCCgccCCCGGGGcccuGGCCCc -3'
miRNA:   3'- -UGUCuGG-GCGGaa-GGGCCCCc---CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 129684 0.66 0.454564
Target:  5'- aGCGG-CCCGUCUccggacgccUCuCCGgaggcccGGGGGGCCa -3'
miRNA:   3'- -UGUCuGGGCGGA---------AG-GGC-------CCCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 128055 0.68 0.389709
Target:  5'- gGCGG-CCacgGCC--CCCaGGuGGGGGCCCa -3'
miRNA:   3'- -UGUCuGGg--CGGaaGGG-CC-CCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 125550 0.66 0.464053
Target:  5'- cCAGACauuCCGCUaucUCCUGGGGGcacccacGCCCg -3'
miRNA:   3'- uGUCUG---GGCGGa--AGGGCCCCCc------CGGG- -5'
5984 5' -65.9 NC_001806.1 + 122559 0.76 0.103841
Target:  5'- --uGGCCCG-UUUUuuGGGGGGGCCCg -3'
miRNA:   3'- uguCUGGGCgGAAGggCCCCCCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 119584 0.68 0.351915
Target:  5'- uGCGGugCUggcgggucuggaGCCc-CCCGGcGGGGGCCg -3'
miRNA:   3'- -UGUCugGG------------CGGaaGGGCC-CCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 119302 0.69 0.330517
Target:  5'- cGCAGACCCGCCca-UCGucGGGGcGUCCg -3'
miRNA:   3'- -UGUCUGGGCGGaagGGCc-CCCC-CGGG- -5'
5984 5' -65.9 NC_001806.1 + 117049 0.68 0.374276
Target:  5'- -aAGGCCCGgCUagacCCaCGGGGGGGUg- -3'
miRNA:   3'- ugUCUGGGCgGAa---GG-GCCCCCCCGgg -5'
5984 5' -65.9 NC_001806.1 + 114742 0.66 0.472769
Target:  5'- gACGGGCCU-CCaUCCCGGGuuuGGGUUCa -3'
miRNA:   3'- -UGUCUGGGcGGaAGGGCCCc--CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 114573 0.69 0.323601
Target:  5'- gGCAGGuCCC-CCUggucccCCCGGcucuGGGGGCCa -3'
miRNA:   3'- -UGUCU-GGGcGGAa-----GGGCC----CCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 114064 0.7 0.26622
Target:  5'- gAUGGuGCCCGCCUUCUCGc-GGGGCCg -3'
miRNA:   3'- -UGUC-UGGGCGGAAGGGCccCCCCGGg -5'
5984 5' -65.9 NC_001806.1 + 112033 0.68 0.38194
Target:  5'- -gAGGCCauCGCCcugcUCaCGGGGGaGGCCCu -3'
miRNA:   3'- ugUCUGG--GCGGa---AGgGCCCCC-CCGGG- -5'
5984 5' -65.9 NC_001806.1 + 111471 0.75 0.135717
Target:  5'- cACAGcauccCCCGCCUUUuuGGGuccGGGCCCg -3'
miRNA:   3'- -UGUCu----GGGCGGAAGggCCCc--CCCGGG- -5'
5984 5' -65.9 NC_001806.1 + 110193 0.66 0.472769
Target:  5'- cGCGGACUCGuCCUcgugcgugCCgcacgCGGuGGGGGCCg -3'
miRNA:   3'- -UGUCUGGGC-GGAa-------GG-----GCC-CCCCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.