miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5985 3' -56.6 NC_001806.1 + 113904 0.66 0.900004
Target:  5'- aCCCCgugUAcgCGGcGGCauguaacguGGCGACCGCGg -3'
miRNA:   3'- aGGGGa--AUa-GCC-CCGg--------UUGCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 65660 0.66 0.900004
Target:  5'- cCCCCUggGUggcugcgcUGGGGCCGcCGGCCu-- -3'
miRNA:   3'- aGGGGAa-UA--------GCCCCGGUuGCUGGugu -5'
5985 3' -56.6 NC_001806.1 + 27844 0.66 0.900004
Target:  5'- gUCCCCggggaCGGGGCCGcc--CCGCGg -3'
miRNA:   3'- -AGGGGaaua-GCCCCGGUugcuGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 21512 0.66 0.900004
Target:  5'- gCCCCggccCGGGGCC-GCGAacgggaggccCCGCu -3'
miRNA:   3'- aGGGGaauaGCCCCGGuUGCU----------GGUGu -5'
5985 3' -56.6 NC_001806.1 + 61784 0.66 0.898082
Target:  5'- gUCCaCCUUGgcgCGGauGGCCGGgugguugaugguacCGGCCACGu -3'
miRNA:   3'- -AGG-GGAAUa--GCC--CCGGUU--------------GCUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 96255 0.66 0.893519
Target:  5'- gCCCCcgGUCGGucguGGUCuACGACCGa- -3'
miRNA:   3'- aGGGGaaUAGCC----CCGGuUGCUGGUgu -5'
5985 3' -56.6 NC_001806.1 + 72422 0.66 0.892858
Target:  5'- -aUCUUUA-CGGGGCCAGCGAgacuuacCUGCAg -3'
miRNA:   3'- agGGGAAUaGCCCCGGUUGCU-------GGUGU- -5'
5985 3' -56.6 NC_001806.1 + 68335 0.66 0.890861
Target:  5'- gCCCCggcagacgcgCGGGacuGCUGGCGGCCGCu -3'
miRNA:   3'- aGGGGaaua------GCCC---CGGUUGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 129865 0.66 0.889519
Target:  5'- cCCCCUcGgggacgugaccacgUGGGGCCAAU-ACCGCGu -3'
miRNA:   3'- aGGGGAaUa-------------GCCCCGGUUGcUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 60581 0.66 0.889519
Target:  5'- cCCCCUggAUCcccgggacguuaccgGGGGCCAcccCGGCCcCAg -3'
miRNA:   3'- aGGGGAa-UAG---------------CCCCGGUu--GCUGGuGU- -5'
5985 3' -56.6 NC_001806.1 + 2977 0.66 0.879874
Target:  5'- gCCCCUcccgcggcgCGGGGaggcggCGGCGGCCGCc -3'
miRNA:   3'- aGGGGAaua------GCCCCg-----GUUGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 150973 0.66 0.879874
Target:  5'- -gCCCgc-UCGcGGGCCcACGAgCCGCGg -3'
miRNA:   3'- agGGGaauAGC-CCCGGuUGCU-GGUGU- -5'
5985 3' -56.6 NC_001806.1 + 88358 0.66 0.872722
Target:  5'- gUCCCgaaggccAUCGGGGCCGcCGGCUggGCu -3'
miRNA:   3'- aGGGGaa-----UAGCCCCGGUuGCUGG--UGu -5'
5985 3' -56.6 NC_001806.1 + 33149 0.66 0.872722
Target:  5'- gCCCCUcGUCccGGGCCGuacGCGGCCu-- -3'
miRNA:   3'- aGGGGAaUAGc-CCCGGU---UGCUGGugu -5'
5985 3' -56.6 NC_001806.1 + 30582 0.66 0.869801
Target:  5'- cCCCCUcgcgccggcaGGGGCCAagaggGCGGCgACGc -3'
miRNA:   3'- aGGGGAauag------CCCCGGU-----UGCUGgUGU- -5'
5985 3' -56.6 NC_001806.1 + 7793 0.66 0.865357
Target:  5'- cCCCCggcuacaGGGGCCAuguuggGCcGCCACGc -3'
miRNA:   3'- aGGGGaauag--CCCCGGU------UGcUGGUGU- -5'
5985 3' -56.6 NC_001806.1 + 3127 0.67 0.857784
Target:  5'- gUCCCgCggcagcgCGGGGCCcagggccccGGCGACCAg- -3'
miRNA:   3'- -AGGG-Gaaua---GCCCCGG---------UUGCUGGUgu -5'
5985 3' -56.6 NC_001806.1 + 26937 0.67 0.857784
Target:  5'- gCCaCCUggUGUCuGGGCCu-CGGCCGCc -3'
miRNA:   3'- aGG-GGA--AUAGcCCCGGuuGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 19349 0.67 0.857784
Target:  5'- cCCCCaagccUCcggGGGGCCcuACGGCCACc -3'
miRNA:   3'- aGGGGaau--AG---CCCCGGu-UGCUGGUGu -5'
5985 3' -56.6 NC_001806.1 + 114358 0.67 0.85001
Target:  5'- -gCCCgacgCGGGcGCCAAC-ACCGCGu -3'
miRNA:   3'- agGGGaauaGCCC-CGGUUGcUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.