miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5986 3' -58.6 NC_001806.1 + 45108 0.66 0.814837
Target:  5'- --cGCCCCCgCgaguagcgaCGGCCGUGuGCCAGucGCc -3'
miRNA:   3'- guuCGGGGG-Ga--------GCUGGUAC-CGGUU--CG- -5'
5986 3' -58.6 NC_001806.1 + 27176 0.66 0.814837
Target:  5'- cCAAGCCgCUCUCcggagaGACgAUGGCagGAGCc -3'
miRNA:   3'- -GUUCGGgGGGAG------CUGgUACCGg-UUCG- -5'
5986 3' -58.6 NC_001806.1 + 101915 0.66 0.814837
Target:  5'- --cGCCCCgCCUgGGCgucaagacaCAgggcGGCCAGGCc -3'
miRNA:   3'- guuCGGGG-GGAgCUG---------GUa---CCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 84457 0.66 0.814837
Target:  5'- uGAGCCUgCUUCgGGCCGcggGGCCcgAGGCc -3'
miRNA:   3'- gUUCGGGgGGAG-CUGGUa--CCGG--UUCG- -5'
5986 3' -58.6 NC_001806.1 + 27070 0.66 0.814837
Target:  5'- gAGGCCCgugCCCg-GGCCcUGGCCcgcgGAGCc -3'
miRNA:   3'- gUUCGGG---GGGagCUGGuACCGG----UUCG- -5'
5986 3' -58.6 NC_001806.1 + 2402 0.66 0.806178
Target:  5'- cCAGGCCgCCaugCGGCgCAgcgGGCCcgAGGCg -3'
miRNA:   3'- -GUUCGGgGGga-GCUG-GUa--CCGG--UUCG- -5'
5986 3' -58.6 NC_001806.1 + 20658 0.66 0.806178
Target:  5'- aCGGGCCCCCggCGugCcgGcGUCGGGg -3'
miRNA:   3'- -GUUCGGGGGgaGCugGuaC-CGGUUCg -5'
5986 3' -58.6 NC_001806.1 + 106134 0.66 0.806178
Target:  5'- gCGAGCCUgCC-CGcccccACCAcGGUCGAGCc -3'
miRNA:   3'- -GUUCGGGgGGaGC-----UGGUaCCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 42398 0.66 0.806178
Target:  5'- --cGCCCCCCa-GACgcugGGCCugAAGCa -3'
miRNA:   3'- guuCGGGGGGagCUGgua-CCGG--UUCG- -5'
5986 3' -58.6 NC_001806.1 + 114204 0.66 0.806178
Target:  5'- --cGCaCCCCCUgcaccCGGCCAaucuggUGGCCAAc- -3'
miRNA:   3'- guuCG-GGGGGA-----GCUGGU------ACCGGUUcg -5'
5986 3' -58.6 NC_001806.1 + 144958 0.66 0.806178
Target:  5'- -cGGCCCCCguggCGGCCc-GGCCcgGGGCc -3'
miRNA:   3'- guUCGGGGGga--GCUGGuaCCGG--UUCG- -5'
5986 3' -58.6 NC_001806.1 + 115820 0.66 0.805303
Target:  5'- --cGCCCCCUUUGuccccgccgacaaGCCGcgauuccgagGGCCGGGCc -3'
miRNA:   3'- guuCGGGGGGAGC-------------UGGUa---------CCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 5922 0.66 0.803549
Target:  5'- --cGCCCCCCcaUUGGCCGgcgGGCgGgaccgccccaagggGGCg -3'
miRNA:   3'- guuCGGGGGG--AGCUGGUa--CCGgU--------------UCG- -5'
5986 3' -58.6 NC_001806.1 + 147550 0.66 0.800908
Target:  5'- -cGGCCCCCC-CGAgCCGcGcGCCAccgucgcacgcgcccGGCa -3'
miRNA:   3'- guUCGGGGGGaGCU-GGUaC-CGGU---------------UCG- -5'
5986 3' -58.6 NC_001806.1 + 97444 0.66 0.797364
Target:  5'- aAAGCgCCCgUCGgucugcACCAUGaCCAAGUg -3'
miRNA:   3'- gUUCGgGGGgAGC------UGGUACcGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 116442 0.66 0.797364
Target:  5'- --cGUCCCgCC-CGugUucgagGGCCAAGCg -3'
miRNA:   3'- guuCGGGG-GGaGCugGua---CCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 129075 0.66 0.797364
Target:  5'- gCGAGCgCCCCgaCGGCCAggugcgugacugUGGuCCGcGCg -3'
miRNA:   3'- -GUUCG-GGGGgaGCUGGU------------ACC-GGUuCG- -5'
5986 3' -58.6 NC_001806.1 + 132723 0.66 0.797364
Target:  5'- ---uCCCCCCgCGAgC-UGGCCcGGCg -3'
miRNA:   3'- guucGGGGGGaGCUgGuACCGGuUCG- -5'
5986 3' -58.6 NC_001806.1 + 136706 0.66 0.797364
Target:  5'- gCGGGCCgCCa-----CGUGGCCGAGCa -3'
miRNA:   3'- -GUUCGGgGGgagcugGUACCGGUUCG- -5'
5986 3' -58.6 NC_001806.1 + 61782 0.66 0.797364
Target:  5'- -cAGUCCaCCUUGGCgCGgaUGGCCGGGUg -3'
miRNA:   3'- guUCGGGgGGAGCUG-GU--ACCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.