miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5986 5' -53.9 NC_001806.1 + 143418 0.66 0.963845
Target:  5'- cGGCUcUUACGAgcggCC-CGGcccGCGCUCc -3'
miRNA:   3'- cCCGA-AAUGCUa---GGuGCCu--CGCGAGu -5'
5986 5' -53.9 NC_001806.1 + 21866 0.66 0.962821
Target:  5'- cGGGCggcgGCGAggacccccgcggccUCCGCGGGcCGCaUCGa -3'
miRNA:   3'- -CCCGaaa-UGCU--------------AGGUGCCUcGCG-AGU- -5'
5986 5' -53.9 NC_001806.1 + 15072 0.66 0.960355
Target:  5'- cGGGCg--ACuGGUCU-CGGGGCGCg-- -3'
miRNA:   3'- -CCCGaaaUG-CUAGGuGCCUCGCGagu -5'
5986 5' -53.9 NC_001806.1 + 112539 0.66 0.958153
Target:  5'- cGGCgagAUGGUCCugaACGGggccaaccuggucacGGCGCUCGu -3'
miRNA:   3'- cCCGaaaUGCUAGG---UGCC---------------UCGCGAGU- -5'
5986 5' -53.9 NC_001806.1 + 4061 0.66 0.95664
Target:  5'- cGGGCgcccacACGG-CCGcCGGGGCGCcCGa -3'
miRNA:   3'- -CCCGaaa---UGCUaGGU-GCCUCGCGaGU- -5'
5986 5' -53.9 NC_001806.1 + 65462 0.66 0.95664
Target:  5'- cGGCccccgGGUCCugGGGGCGCcCGc -3'
miRNA:   3'- cCCGaaaugCUAGGugCCUCGCGaGU- -5'
5986 5' -53.9 NC_001806.1 + 43223 0.66 0.95664
Target:  5'- gGGGCUaUAUGuggCUggGGAGCGCg-- -3'
miRNA:   3'- -CCCGAaAUGCua-GGugCCUCGCGagu -5'
5986 5' -53.9 NC_001806.1 + 151100 0.66 0.948514
Target:  5'- cGGGggUcGCGGgggUCGCGGGGgGCUCc -3'
miRNA:   3'- -CCCgaAaUGCUa--GGUGCCUCgCGAGu -5'
5986 5' -53.9 NC_001806.1 + 83334 0.66 0.948083
Target:  5'- gGGGCUUUugGAcaccgggcccuuuUCCGCGGcGGCcaUCGa -3'
miRNA:   3'- -CCCGAAAugCU-------------AGGUGCC-UCGcgAGU- -5'
5986 5' -53.9 NC_001806.1 + 130439 0.67 0.934536
Target:  5'- aGGGCccagcGCGAUCUACGGgAGCuGCg-- -3'
miRNA:   3'- -CCCGaaa--UGCUAGGUGCC-UCG-CGagu -5'
5986 5' -53.9 NC_001806.1 + 140290 0.67 0.924002
Target:  5'- gGGGUccUAgGAUCCcggcCGGAucGCGCUCGu -3'
miRNA:   3'- -CCCGaaAUgCUAGGu---GCCU--CGCGAGU- -5'
5986 5' -53.9 NC_001806.1 + 95552 0.67 0.924002
Target:  5'- gGGGCgcUGCG-UCCGCGaGcAGCGCg-- -3'
miRNA:   3'- -CCCGaaAUGCuAGGUGC-C-UCGCGagu -5'
5986 5' -53.9 NC_001806.1 + 97822 0.68 0.91779
Target:  5'- gGGGCca-GCGccaacgcGUCCGUGGAGCGCaUCAa -3'
miRNA:   3'- -CCCGaaaUGC-------UAGGUGCCUCGCG-AGU- -5'
5986 5' -53.9 NC_001806.1 + 94749 0.68 0.900007
Target:  5'- cGGGCUgucggACGccgaCCGCGcgcGGGCGCUCu -3'
miRNA:   3'- -CCCGAaa---UGCua--GGUGC---CUCGCGAGu -5'
5986 5' -53.9 NC_001806.1 + 25006 0.68 0.900007
Target:  5'- cGGGCcgggACGGg--GCGGGGCGCUUg -3'
miRNA:   3'- -CCCGaaa-UGCUaggUGCCUCGCGAGu -5'
5986 5' -53.9 NC_001806.1 + 18455 0.69 0.886576
Target:  5'- uGGGCccggGCGuUCCACGGAGCugguaUCGg -3'
miRNA:   3'- -CCCGaaa-UGCuAGGUGCCUCGcg---AGU- -5'
5986 5' -53.9 NC_001806.1 + 56867 0.69 0.879513
Target:  5'- cGGGCccacCGAUCCACcaGAGCGCg-- -3'
miRNA:   3'- -CCCGaaauGCUAGGUGc-CUCGCGagu -5'
5986 5' -53.9 NC_001806.1 + 4829 0.69 0.872225
Target:  5'- gGGGCg--GCGAggCCGCGGGGUcggGCgUCGg -3'
miRNA:   3'- -CCCGaaaUGCUa-GGUGCCUCG---CG-AGU- -5'
5986 5' -53.9 NC_001806.1 + 150982 0.69 0.864717
Target:  5'- cGGGCcc-ACGAgCCGCGGcGCGC-CAg -3'
miRNA:   3'- -CCCGaaaUGCUaGGUGCCuCGCGaGU- -5'
5986 5' -53.9 NC_001806.1 + 2661 0.69 0.864717
Target:  5'- aGGGCg--GCGG-CCGCGG-GCGC-CGc -3'
miRNA:   3'- -CCCGaaaUGCUaGGUGCCuCGCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.