miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5987 5' -60.9 NC_001806.1 + 26961 0.66 0.714394
Target:  5'- cGCCCGCcu-GGCGCgCCGCGGcUCGUg -3'
miRNA:   3'- -UGGGUGaccCUGCG-GGCGUCuAGCGu -5'
5987 5' -60.9 NC_001806.1 + 63949 0.66 0.714394
Target:  5'- -gUUGCUGGuGAUgGCCCGCAGgGUCGCc -3'
miRNA:   3'- ugGGUGACC-CUG-CGGGCGUC-UAGCGu -5'
5987 5' -60.9 NC_001806.1 + 38174 0.66 0.714394
Target:  5'- gACCaCACacugUGGGGCGCUgGUugaGGAUCGUu -3'
miRNA:   3'- -UGG-GUG----ACCCUGCGGgCG---UCUAGCGu -5'
5987 5' -60.9 NC_001806.1 + 72016 0.66 0.704685
Target:  5'- uACCCA--GGGGCGCgCgGCGGAcugCGCu -3'
miRNA:   3'- -UGGGUgaCCCUGCG-GgCGUCUa--GCGu -5'
5987 5' -60.9 NC_001806.1 + 78683 0.66 0.704685
Target:  5'- uGCUC-CUGGGcGCGCCCGUc-GUCGUg -3'
miRNA:   3'- -UGGGuGACCC-UGCGGGCGucUAGCGu -5'
5987 5' -60.9 NC_001806.1 + 150972 0.66 0.704685
Target:  5'- gGCCCGCUcgcGGGcccACGagCCGCGGcgCGCc -3'
miRNA:   3'- -UGGGUGA---CCC---UGCg-GGCGUCuaGCGu -5'
5987 5' -60.9 NC_001806.1 + 105629 0.66 0.694918
Target:  5'- cCCCAUUGGGAccaauaCGCCCGCGuuUCu-- -3'
miRNA:   3'- uGGGUGACCCU------GCGGGCGUcuAGcgu -5'
5987 5' -60.9 NC_001806.1 + 115873 0.66 0.694918
Target:  5'- aACCCAagccGGGAC-UCCGCGGAcggauUCGCu -3'
miRNA:   3'- -UGGGUga--CCCUGcGGGCGUCU-----AGCGu -5'
5987 5' -60.9 NC_001806.1 + 32698 0.66 0.685102
Target:  5'- aGCCU-CUGGGGCGCCC-CcuGUCGUu -3'
miRNA:   3'- -UGGGuGACCCUGCGGGcGucUAGCGu -5'
5987 5' -60.9 NC_001806.1 + 82550 0.66 0.681163
Target:  5'- cGCCCGCgaUGGGAgcgugcgUGCCCGCguaaacccaccaaaGGGuUCGCGa -3'
miRNA:   3'- -UGGGUG--ACCCU-------GCGGGCG--------------UCU-AGCGU- -5'
5987 5' -60.9 NC_001806.1 + 66426 0.66 0.675243
Target:  5'- gUgCGgUGGGGCGCCCccGCAGGUCcgGCu -3'
miRNA:   3'- uGgGUgACCCUGCGGG--CGUCUAG--CGu -5'
5987 5' -60.9 NC_001806.1 + 33352 0.66 0.675243
Target:  5'- cGCCCcgGCUgcaGGGGgGCCCGgAGAgcCGCGg -3'
miRNA:   3'- -UGGG--UGA---CCCUgCGGGCgUCUa-GCGU- -5'
5987 5' -60.9 NC_001806.1 + 145248 0.66 0.675243
Target:  5'- gACCCAaacgacagGGGGCGCCC-CAGAg-GCu -3'
miRNA:   3'- -UGGGUga------CCCUGCGGGcGUCUagCGu -5'
5987 5' -60.9 NC_001806.1 + 20773 0.66 0.674256
Target:  5'- gGCCC-CUGGGACuauaugaGCCCGaGGA-CGCc -3'
miRNA:   3'- -UGGGuGACCCUG-------CGGGCgUCUaGCGu -5'
5987 5' -60.9 NC_001806.1 + 97618 0.66 0.665352
Target:  5'- cGCCCGCgacgccauGGAccgcaucuuCGCCCGCAGGUacaaCGCGa -3'
miRNA:   3'- -UGGGUGac------CCU---------GCGGGCGUCUA----GCGU- -5'
5987 5' -60.9 NC_001806.1 + 131285 0.66 0.665352
Target:  5'- uGCCCGCgugGGGGCGCUguuugCGCA---CGCAc -3'
miRNA:   3'- -UGGGUGa--CCCUGCGG-----GCGUcuaGCGU- -5'
5987 5' -60.9 NC_001806.1 + 29371 0.66 0.665352
Target:  5'- uACCUgauAgUGGGcgugACGCCCaGCGGGUCGUu -3'
miRNA:   3'- -UGGG---UgACCC----UGCGGG-CGUCUAGCGu -5'
5987 5' -60.9 NC_001806.1 + 52703 0.66 0.664362
Target:  5'- cACCCGgaGGuuccggaGGCGCCgCGCGGAcggCGCGg -3'
miRNA:   3'- -UGGGUgaCC-------CUGCGG-GCGUCUa--GCGU- -5'
5987 5' -60.9 NC_001806.1 + 810 0.66 0.664362
Target:  5'- aACCCuccgGGGGCGCCCGCGcAccaccaccgccccUCGCc -3'
miRNA:   3'- -UGGGuga-CCCUGCGGGCGUcU-------------AGCGu -5'
5987 5' -60.9 NC_001806.1 + 115228 0.66 0.655436
Target:  5'- aACCCcCgGGGACGCgCCGCcGGggGCGu -3'
miRNA:   3'- -UGGGuGaCCCUGCG-GGCGuCUagCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.