miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5988 3' -58.4 NC_001806.1 + 53281 0.66 0.823334
Target:  5'- cCCGCCGUUgAGCC---CCuCGCCCGu -3'
miRNA:   3'- uGGCGGUAG-UCGGaauGGuGCGGGCu -5'
5988 3' -58.4 NC_001806.1 + 106360 0.66 0.823334
Target:  5'- gACCGCCGguuggGGCCcgGCgGCaCCCGAc -3'
miRNA:   3'- -UGGCGGUag---UCGGaaUGgUGcGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 69217 0.66 0.823334
Target:  5'- aGCCuGCCGUCuccAGCC-UGCUGCaGCUCGGg -3'
miRNA:   3'- -UGG-CGGUAG---UCGGaAUGGUG-CGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 1286 0.66 0.819955
Target:  5'- cGCCGCCGUCGucuucgucccaggcGCCUUcCCAguccacaacuuccCGCCgCGGg -3'
miRNA:   3'- -UGGCGGUAGU--------------CGGAAuGGU-------------GCGG-GCU- -5'
5988 3' -58.4 NC_001806.1 + 102498 0.66 0.814837
Target:  5'- gGCCGCCcUCGGUCccgaucACCGCGgCCa- -3'
miRNA:   3'- -UGGCGGuAGUCGGaa----UGGUGCgGGcu -5'
5988 3' -58.4 NC_001806.1 + 23798 0.66 0.814837
Target:  5'- gGCCGCCGggGGCCgccucuuugGCCcccugcGCGCCuCGGg -3'
miRNA:   3'- -UGGCGGUagUCGGaa-------UGG------UGCGG-GCU- -5'
5988 3' -58.4 NC_001806.1 + 145419 0.66 0.813978
Target:  5'- gACCGCCAgggggUCGGCCggUGucgcuguaaccccCCACGCCaauGAc -3'
miRNA:   3'- -UGGCGGU-----AGUCGGa-AU-------------GGUGCGGg--CU- -5'
5988 3' -58.4 NC_001806.1 + 14040 0.66 0.812256
Target:  5'- uACCGCgAUCuuuauugggGGCCgggGCCACggauuuccugguuaGCCCGGu -3'
miRNA:   3'- -UGGCGgUAG---------UCGGaa-UGGUG--------------CGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 101209 0.66 0.80966
Target:  5'- gGCCGCCcgCA-CCguauccggauccaaUGCCAacuCGCCCGAg -3'
miRNA:   3'- -UGGCGGuaGUcGGa-------------AUGGU---GCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 23078 0.66 0.806178
Target:  5'- gGCCGCCGUgCGcGCCgugaGCCugGUcgCCGGg -3'
miRNA:   3'- -UGGCGGUA-GU-CGGaa--UGGugCG--GGCU- -5'
5988 3' -58.4 NC_001806.1 + 55881 0.66 0.806178
Target:  5'- cCCGCC-----CCggGCCAUGCCCGAc -3'
miRNA:   3'- uGGCGGuagucGGaaUGGUGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 86636 0.66 0.806178
Target:  5'- gGCuCGCCAUCuugucGCCcacgGCCGucaGCCCGGc -3'
miRNA:   3'- -UG-GCGGUAGu----CGGaa--UGGUg--CGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 94743 0.66 0.806178
Target:  5'- cGCCGCCgggcuGUCGGaCgccgACCGCGCgCGGg -3'
miRNA:   3'- -UGGCGG-----UAGUCgGaa--UGGUGCGgGCU- -5'
5988 3' -58.4 NC_001806.1 + 78917 0.66 0.797364
Target:  5'- cAUCGCCGagCGGCC---CCuCGCCCGGg -3'
miRNA:   3'- -UGGCGGUa-GUCGGaauGGuGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 70475 0.66 0.797364
Target:  5'- cGCCGCCuguaugcggUGGUCggggaCACGCCCGAc -3'
miRNA:   3'- -UGGCGGua-------GUCGGaaug-GUGCGGGCU- -5'
5988 3' -58.4 NC_001806.1 + 61595 0.66 0.797364
Target:  5'- gGCCGUCGUguGCacgGCCuCGuCCCGGc -3'
miRNA:   3'- -UGGCGGUAguCGgaaUGGuGC-GGGCU- -5'
5988 3' -58.4 NC_001806.1 + 51405 0.66 0.797364
Target:  5'- cGCgGCCGUgGgcGCCUUGCggcaGCGCuCCGAc -3'
miRNA:   3'- -UGgCGGUAgU--CGGAAUGg---UGCG-GGCU- -5'
5988 3' -58.4 NC_001806.1 + 78209 0.66 0.797364
Target:  5'- uGCUGCCAgcguuuUCGGCCggagGCCcucCGaCCCGGg -3'
miRNA:   3'- -UGGCGGU------AGUCGGaa--UGGu--GC-GGGCU- -5'
5988 3' -58.4 NC_001806.1 + 34821 0.66 0.797364
Target:  5'- cCCGCCcauccgCGGCCccucccggcaGCCACGCCCc- -3'
miRNA:   3'- uGGCGGua----GUCGGaa--------UGGUGCGGGcu -5'
5988 3' -58.4 NC_001806.1 + 22506 0.66 0.797364
Target:  5'- cCUGCUgacCAGCCUgcGCCGCGCCUa- -3'
miRNA:   3'- uGGCGGua-GUCGGAa-UGGUGCGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.