miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 3' -64.5 NC_001806.1 + 108524 0.66 0.577657
Target:  5'- aUCCAGguaCCCgGcGGCCCgcgugcggcuGGCCgcgCCCGc -3'
miRNA:   3'- -GGGUCa--GGGgC-CCGGG----------UCGGaa-GGGC- -5'
5989 3' -64.5 NC_001806.1 + 96473 0.66 0.577657
Target:  5'- cCCCGGcacgCCUgGGGUCgCGGCCgcgaCCCa -3'
miRNA:   3'- -GGGUCa---GGGgCCCGG-GUCGGaa--GGGc -5'
5989 3' -64.5 NC_001806.1 + 78930 0.66 0.577657
Target:  5'- cCCCucgCCCgGGGCCC-GCCgugUCUGg -3'
miRNA:   3'- -GGGucaGGGgCCCGGGuCGGaa-GGGC- -5'
5989 3' -64.5 NC_001806.1 + 47189 0.66 0.577657
Target:  5'- gCCAccGcCCCCccGCCCGGCCgggggUCCCa -3'
miRNA:   3'- gGGU--CaGGGGccCGGGUCGGa----AGGGc -5'
5989 3' -64.5 NC_001806.1 + 7025 0.66 0.577657
Target:  5'- cCCCGG-CCCCaguuGGGCCgGGCga-CCCa -3'
miRNA:   3'- -GGGUCaGGGG----CCCGGgUCGgaaGGGc -5'
5989 3' -64.5 NC_001806.1 + 151683 0.66 0.577657
Target:  5'- gCUAGUCUCggccggggGGGCCCGGgCUgCCCGc -3'
miRNA:   3'- gGGUCAGGGg-------CCCGGGUCgGAaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 74198 0.66 0.577657
Target:  5'- gCCGucGUgCCCGuGGUCCAGCUgcucgagUCCCu -3'
miRNA:   3'- gGGU--CAgGGGC-CCGGGUCGGa------AGGGc -5'
5989 3' -64.5 NC_001806.1 + 143610 0.66 0.577657
Target:  5'- nCCCGuUCCCCGGGggccguuaucUCCAGCgc-CCCGu -3'
miRNA:   3'- -GGGUcAGGGGCCC----------GGGUCGgaaGGGC- -5'
5989 3' -64.5 NC_001806.1 + 83764 0.66 0.576708
Target:  5'- gCgCAGUCugccaCCCGGGCCCucaucggaaccuuGGCCU-CCgGg -3'
miRNA:   3'- -GgGUCAG-----GGGCCCGGG-------------UCGGAaGGgC- -5'
5989 3' -64.5 NC_001806.1 + 85411 0.66 0.568179
Target:  5'- aCCCGGaCCCCacuuacggGGGCCaCAuGCUguacgucaucuUUCCCGg -3'
miRNA:   3'- -GGGUCaGGGG--------CCCGG-GU-CGG-----------AAGGGC- -5'
5989 3' -64.5 NC_001806.1 + 38656 0.66 0.568179
Target:  5'- aCCCGuggUgCCGGGgCCGGCUcUCCCa -3'
miRNA:   3'- -GGGUca-GgGGCCCgGGUCGGaAGGGc -5'
5989 3' -64.5 NC_001806.1 + 1550 0.66 0.568179
Target:  5'- gCCCGcgCCaCCGGGCCgGGCCggCgCGc -3'
miRNA:   3'- -GGGUcaGG-GGCCCGGgUCGGaaGgGC- -5'
5989 3' -64.5 NC_001806.1 + 73452 0.66 0.567233
Target:  5'- aCCCAGgCCgggguggCC-GGCCCGGCCgccgCCCu -3'
miRNA:   3'- -GGGUCaGG-------GGcCCGGGUCGGaa--GGGc -5'
5989 3' -64.5 NC_001806.1 + 24487 0.66 0.565343
Target:  5'- gCCCAuGUCCCCgcgcgaguaccgccGGGCCguGCUg--CCGg -3'
miRNA:   3'- -GGGU-CAGGGG--------------CCCGGguCGGaagGGC- -5'
5989 3' -64.5 NC_001806.1 + 94016 0.66 0.55874
Target:  5'- cCCCGGUgUCCGaGCCCA-CCguggCCCGu -3'
miRNA:   3'- -GGGUCAgGGGCcCGGGUcGGaa--GGGC- -5'
5989 3' -64.5 NC_001806.1 + 58062 0.66 0.55874
Target:  5'- uCCCAGaggCCCGGGa--GGCCgagcUCCCGg -3'
miRNA:   3'- -GGGUCag-GGGCCCgggUCGGa---AGGGC- -5'
5989 3' -64.5 NC_001806.1 + 100086 0.66 0.549346
Target:  5'- cCCCGGaCCCCaGGGUCUcccgcGGCCggcugaccgCCCGc -3'
miRNA:   3'- -GGGUCaGGGG-CCCGGG-----UCGGaa-------GGGC- -5'
5989 3' -64.5 NC_001806.1 + 49653 0.66 0.549346
Target:  5'- gCCCGGagCUCCGGGC--GGCaUUCCCGu -3'
miRNA:   3'- -GGGUCa-GGGGCCCGggUCGgAAGGGC- -5'
5989 3' -64.5 NC_001806.1 + 148263 0.66 0.540002
Target:  5'- gCCCccUCCCC-GGCCCGcCCUUUCCu -3'
miRNA:   3'- -GGGucAGGGGcCCGGGUcGGAAGGGc -5'
5989 3' -64.5 NC_001806.1 + 49434 0.66 0.540002
Target:  5'- cCCgCGGUCCuCCGcaGGCCCGGCaggggggauacCUgggUCCCGu -3'
miRNA:   3'- -GG-GUCAGG-GGC--CCGGGUCG-----------GA---AGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.