miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5991 5' -59.4 NC_001806.1 + 71499 0.65 0.805376
Target:  5'- aCCCCCGuguguuguucuCgGUGUuauggugugcgggCgGGCGGGGGGGg -3'
miRNA:   3'- -GGGGGUuu---------GgUACA-------------GgCCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 87434 0.66 0.799315
Target:  5'- gCCCCUAAAUCgccccuggGUGUCCGGCAGa---- -3'
miRNA:   3'- -GGGGGUUUGG--------UACAGGCCGUCccccu -5'
5991 5' -59.4 NC_001806.1 + 151318 0.66 0.799315
Target:  5'- gCCUCUGGcGCCGgcUCgGGCGGGGGGc -3'
miRNA:   3'- -GGGGGUU-UGGUacAGgCCGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 104902 0.66 0.799315
Target:  5'- cCCCCCAGGCCGUG-CUGGCGu----- -3'
miRNA:   3'- -GGGGGUUUGGUACaGGCCGUcccccu -5'
5991 5' -59.4 NC_001806.1 + 66338 0.66 0.799315
Target:  5'- gCCCCAAagcGCUcgGUgCggugcaGGCAGcGGGGAc -3'
miRNA:   3'- gGGGGUU---UGGuaCAgG------CCGUC-CCCCU- -5'
5991 5' -59.4 NC_001806.1 + 35371 0.66 0.781623
Target:  5'- cCCCCCuacgauAGCU-UGUCUGGUAGGaacgaGGGGc -3'
miRNA:   3'- -GGGGGu-----UUGGuACAGGCCGUCC-----CCCU- -5'
5991 5' -59.4 NC_001806.1 + 73988 0.66 0.781623
Target:  5'- gCCCC-GGCCGgggcgGcCCcGCAGGGGGc -3'
miRNA:   3'- gGGGGuUUGGUa----CaGGcCGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 95338 0.66 0.781623
Target:  5'- gCCCCGacgacgacgggGACCGUGUCgCcguagaggaaggGGCAcGGGGGu -3'
miRNA:   3'- gGGGGU-----------UUGGUACAG-G------------CCGU-CCCCCu -5'
5991 5' -59.4 NC_001806.1 + 50090 0.66 0.781623
Target:  5'- gUCCCGucggggccgcGGCCGUG-CCGuuacugagcGCGGGGGGGu -3'
miRNA:   3'- gGGGGU----------UUGGUACaGGC---------CGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 136386 0.66 0.781623
Target:  5'- gCCUCCGcGACCGUGgccagCUGGCGGGucagcGGGu -3'
miRNA:   3'- -GGGGGU-UUGGUACa----GGCCGUCC-----CCCu -5'
5991 5' -59.4 NC_001806.1 + 96323 0.66 0.772583
Target:  5'- gCCCCCAGGCUAc--CUGaCGGGGGGc -3'
miRNA:   3'- -GGGGGUUUGGUacaGGCcGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 101277 0.66 0.771673
Target:  5'- aCCCagCCAcguaaaugggcacGGCCcUGUCgGGCAGGGGc- -3'
miRNA:   3'- -GGG--GGU-------------UUGGuACAGgCCGUCCCCcu -5'
5991 5' -59.4 NC_001806.1 + 67520 0.66 0.771673
Target:  5'- gCCCUggGCC--GUCgCGGCGagagaucGGGGGGc -3'
miRNA:   3'- gGGGGuuUGGuaCAG-GCCGU-------CCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 32990 0.66 0.763425
Target:  5'- gCCCCGGGCCGgg-CCGcCAcGGGGGc -3'
miRNA:   3'- gGGGGUUUGGUacaGGCcGU-CCCCCu -5'
5991 5' -59.4 NC_001806.1 + 16057 0.66 0.763425
Target:  5'- uCCCCCAGGCaaAUGUCCu-CGGGGGu- -3'
miRNA:   3'- -GGGGGUUUGg-UACAGGccGUCCCCcu -5'
5991 5' -59.4 NC_001806.1 + 66636 0.67 0.754157
Target:  5'- gCUCCAgGGCCGgcuccaacCCGcGCGGGGGGAg -3'
miRNA:   3'- gGGGGU-UUGGUaca-----GGC-CGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 26689 0.67 0.754157
Target:  5'- gCCCCCAccGCCcggcGUGggcCCGGgGGGcGGGGc -3'
miRNA:   3'- -GGGGGUu-UGG----UACa--GGCCgUCC-CCCU- -5'
5991 5' -59.4 NC_001806.1 + 85733 0.67 0.754157
Target:  5'- gCCCCGAACCcugcgGUCCGGagccgcgcggcCAcgucguccGGGGGGu -3'
miRNA:   3'- gGGGGUUUGGua---CAGGCC-----------GU--------CCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 33051 0.67 0.744788
Target:  5'- gCCCCGGGCCGggaacCCGGaaaagccucCGGGGGGc -3'
miRNA:   3'- gGGGGUUUGGUaca--GGCC---------GUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 119954 0.67 0.743845
Target:  5'- gCCCCC--ACCAgcUGUCUcccgcugGGCAGGcGGAg -3'
miRNA:   3'- -GGGGGuuUGGU--ACAGG-------CCGUCCcCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.