miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5992 3' -55 NC_001806.1 + 128859 0.66 0.940819
Target:  5'- gUCCGcGCCCCgGucaugccuuucGUGGGGggCGCGGa- -3'
miRNA:   3'- -GGGC-CGGGGgU-----------UAUUUCuaGCGCCau -5'
5992 3' -55 NC_001806.1 + 118136 0.66 0.940819
Target:  5'- gCCUGGCCCCCGAUGAucuccUGCa--- -3'
miRNA:   3'- -GGGCCGGGGGUUAUUucua-GCGccau -5'
5992 3' -55 NC_001806.1 + 74075 0.66 0.940819
Target:  5'- aCCCaGGCCCgucgggCGAUcGAGggCGCGGUu -3'
miRNA:   3'- -GGG-CCGGGg-----GUUAuUUCuaGCGCCAu -5'
5992 3' -55 NC_001806.1 + 67503 0.66 0.940819
Target:  5'- uCCCGaCCCCCuggGGAGcccugggccGUCGCGGc- -3'
miRNA:   3'- -GGGCcGGGGGuuaUUUC---------UAGCGCCau -5'
5992 3' -55 NC_001806.1 + 51505 0.66 0.940819
Target:  5'- -aCGGUUCCCGAgaguuuGAUCGUGGa- -3'
miRNA:   3'- ggGCCGGGGGUUauuu--CUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 41810 0.66 0.940819
Target:  5'- uCCaCGGCCCCgCAAUAcgcGGggGCGGg- -3'
miRNA:   3'- -GG-GCCGGGG-GUUAUuu-CUagCGCCau -5'
5992 3' -55 NC_001806.1 + 13650 0.66 0.940819
Target:  5'- gCCGGaCCCCCG--GAGGGUCGgucagcUGGUc -3'
miRNA:   3'- gGGCC-GGGGGUuaUUUCUAGC------GCCAu -5'
5992 3' -55 NC_001806.1 + 140460 0.66 0.940819
Target:  5'- aCUCGGCCCCCGAggccAGcaugacguuAUCuCGGUGg -3'
miRNA:   3'- -GGGCCGGGGGUUauu-UC---------UAGcGCCAU- -5'
5992 3' -55 NC_001806.1 + 144337 0.66 0.940819
Target:  5'- aUCCGGCCCCCcgccccgcgccGGUccauuAAGggCGCGcGUGc -3'
miRNA:   3'- -GGGCCGGGGG-----------UUAu----UUCuaGCGC-CAU- -5'
5992 3' -55 NC_001806.1 + 14432 0.66 0.936017
Target:  5'- gCCgcaGGUCCCCGAU--GGGUgGCGGc- -3'
miRNA:   3'- -GGg--CCGGGGGUUAuuUCUAgCGCCau -5'
5992 3' -55 NC_001806.1 + 114549 0.66 0.936017
Target:  5'- cCCCGGCCCUgCGcgAccuGUCGCGGc- -3'
miRNA:   3'- -GGGCCGGGG-GUuaUuucUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 134256 0.66 0.930975
Target:  5'- cCCCGGCagCCGgaAUGAGGAgcucgUCGgGGUGg -3'
miRNA:   3'- -GGGCCGggGGU--UAUUUCU-----AGCgCCAU- -5'
5992 3' -55 NC_001806.1 + 92761 0.66 0.930975
Target:  5'- aCCUGGCCCCCAacaacGUGAGcGAgcuggCGauGUAc -3'
miRNA:   3'- -GGGCCGGGGGU-----UAUUU-CUa----GCgcCAU- -5'
5992 3' -55 NC_001806.1 + 84114 0.66 0.920163
Target:  5'- gCCaCGGUCCgCCAGUccuggGAAGcgcAUCGCGGg- -3'
miRNA:   3'- -GG-GCCGGG-GGUUA-----UUUC---UAGCGCCau -5'
5992 3' -55 NC_001806.1 + 25497 0.66 0.920163
Target:  5'- gCCCGaaccCCCCCGA--GGGAgCGCGGg- -3'
miRNA:   3'- -GGGCc---GGGGGUUauUUCUaGCGCCau -5'
5992 3' -55 NC_001806.1 + 43126 0.67 0.914983
Target:  5'- uCCCGGCCgCCCGccucucccCGCGGUu -3'
miRNA:   3'- -GGGCCGG-GGGUuauuucuaGCGCCAu -5'
5992 3' -55 NC_001806.1 + 17857 0.67 0.914395
Target:  5'- cCCgCGGCCCCCAAccacccccUGGAGAcccugcUCaGcCGGUAc -3'
miRNA:   3'- -GG-GCCGGGGGUU--------AUUUCU------AG-C-GCCAU- -5'
5992 3' -55 NC_001806.1 + 91781 0.67 0.914395
Target:  5'- uCUCGGCCCU----GAAGcgCGCGGa- -3'
miRNA:   3'- -GGGCCGGGGguuaUUUCuaGCGCCau -5'
5992 3' -55 NC_001806.1 + 103689 0.67 0.908387
Target:  5'- cCCCcGCCCUCcGUGGAGGUgGgGGUu -3'
miRNA:   3'- -GGGcCGGGGGuUAUUUCUAgCgCCAu -5'
5992 3' -55 NC_001806.1 + 135610 0.67 0.908387
Target:  5'- uCCagGGCCCCCGcuGUugcgcgccGGAGcUCGCGGUc -3'
miRNA:   3'- -GGg-CCGGGGGU--UA--------UUUCuAGCGCCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.