miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5993 5' -57.3 NC_001806.1 + 98944 0.65 0.880704
Target:  5'- cGGaacaCAAGGCCaagaagaaggGCACGAGCGCg -3'
miRNA:   3'- -CCgg--GUUCCGGggua------UGUGCUCGUGg -5'
5993 5' -57.3 NC_001806.1 + 41424 0.66 0.876482
Target:  5'- uGCCCAGcGCgCCGUGguCGGgguGCGCCg -3'
miRNA:   3'- cCGGGUUcCGgGGUAUguGCU---CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 30720 0.66 0.876482
Target:  5'- -cUCCucGGCCCCGaccccCGCGGGgGCCg -3'
miRNA:   3'- ccGGGuuCCGGGGUau---GUGCUCgUGG- -5'
5993 5' -57.3 NC_001806.1 + 143543 0.66 0.876482
Target:  5'- cGGCCCGGcccGGCCCg--GCcCGGcCACCg -3'
miRNA:   3'- -CCGGGUU---CCGGGguaUGuGCUcGUGG- -5'
5993 5' -57.3 NC_001806.1 + 37586 0.66 0.876482
Target:  5'- gGGCCCuccuuGGCCCgCcaGCACcgGGGC-CCa -3'
miRNA:   3'- -CCGGGuu---CCGGG-GuaUGUG--CUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 57954 0.66 0.876482
Target:  5'- aGGCaugCAAGGCCCCcgccucucccGCcCGGGCAgCg -3'
miRNA:   3'- -CCGg--GUUCCGGGGua--------UGuGCUCGUgG- -5'
5993 5' -57.3 NC_001806.1 + 56991 0.66 0.876482
Target:  5'- aGCaCCAGGaGCgCCgCAUAgGCG-GCGCCc -3'
miRNA:   3'- cCG-GGUUC-CG-GG-GUAUgUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 137087 0.66 0.872182
Target:  5'- aGGgCCGAGGCCUuuuuaaauuuuacguCuAUGCACGGGgugcaGCCa -3'
miRNA:   3'- -CCgGGUUCCGGG---------------G-UAUGUGCUCg----UGG- -5'
5993 5' -57.3 NC_001806.1 + 80115 0.66 0.869273
Target:  5'- cGGCCCcuguuuuAGGCCgcaaCCcgGC-CGAGCcgACCu -3'
miRNA:   3'- -CCGGGu------UCCGG----GGuaUGuGCUCG--UGG- -5'
5993 5' -57.3 NC_001806.1 + 13616 0.66 0.869273
Target:  5'- gGGUCCGguAGGCCCgCcuggaugugGUACAC--GCGCCg -3'
miRNA:   3'- -CCGGGU--UCCGGG-G---------UAUGUGcuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 29447 0.66 0.869273
Target:  5'- aGGCCgagGAGGCCgUCAgg-GCGGGCACg -3'
miRNA:   3'- -CCGGg--UUCCGG-GGUaugUGCUCGUGg -5'
5993 5' -57.3 NC_001806.1 + 84070 0.66 0.869273
Target:  5'- gGGagUCGGGGCCCCAgcUGCGCGcugccgcggaGGC-CCg -3'
miRNA:   3'- -CCg-GGUUCCGGGGU--AUGUGC----------UCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 98143 0.66 0.869273
Target:  5'- cGGCCCGGGGCCUgcUACAgc--CGCCc -3'
miRNA:   3'- -CCGGGUUCCGGGguAUGUgcucGUGG- -5'
5993 5' -57.3 NC_001806.1 + 58054 0.66 0.868541
Target:  5'- uGGCUCGcucccagAGGCCCgGgagGC-CGAGCucCCg -3'
miRNA:   3'- -CCGGGU-------UCCGGGgUa--UGuGCUCGu-GG- -5'
5993 5' -57.3 NC_001806.1 + 7493 0.66 0.868541
Target:  5'- aGCCCGGGcaaguauGCCCCccugGCGAGC-CCa -3'
miRNA:   3'- cCGGGUUC-------CGGGGuaugUGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 1548 0.66 0.868541
Target:  5'- cGGCCCGcgccaccGGGCCgggCCG---GCGcGCACCg -3'
miRNA:   3'- -CCGGGU-------UCCGG---GGUaugUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 122046 0.66 0.861858
Target:  5'- -aCCCGGGGCCCC-UugG-GAGaGCCa -3'
miRNA:   3'- ccGGGUUCCGGGGuAugUgCUCgUGG- -5'
5993 5' -57.3 NC_001806.1 + 101113 0.66 0.861858
Target:  5'- cGGCCCGcggGGGUCgUcgAcCACGgccAGCACCc -3'
miRNA:   3'- -CCGGGU---UCCGGgGuaU-GUGC---UCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 79552 0.66 0.861858
Target:  5'- cGCCCGuGGGCCCC---CGCGAcgacuuccgGCGCUu -3'
miRNA:   3'- cCGGGU-UCCGGGGuauGUGCU---------CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 78935 0.66 0.861858
Target:  5'- cGCCCGGGGCCcgCCGUGuCugGuGC-UCg -3'
miRNA:   3'- cCGGGUUCCGG--GGUAU-GugCuCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.